1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
...ttggactagactctgttctccattgttcaacattagaaggttattactacaaaataacttgttggcattggaatataactggcaccttttgcatgtgcagCCAATTGGAAATATTGCTGAAAGATTTCATGCTTTGTGCGTGAAGGATAGTGGTGTTCTATATGAGGATCCTTATATTCAG
species | Glycine max |
transcript | GLYMA12G30520.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGCCACAGCCATAGTACCTGCTGGAGAACAGGCCAATTCTGTACAG CCAATTGGAAATATTGCTGAAAGATTTCATGCTTTGNGCGTGAAGGATAGTEST: gi|298199238|gb|HO042601.1|HO042601
genomic: TTGAAGCCACAGCCATAGTACCTGCTGGAGAACAGGCCAATTCTGTACAGgtacattgtg ... gcatgtgcagCCAATTGGAAATATTGCTGAAAGATTTCATGCTTTGTGCGTGAAGGATAGT
EST: TTGAAGCCACAGCCATAGTACCTGCTGGAGAACAGGCCAATTCTGTACAG CCAATTGGAAATATTGCTGAAAGATTTCATGCTTTGTGCGTGAAGGATAGTEST: gi|151404341|gb|EV274151.1|EV274151
genomic: TTGAAGCCACAGCCATAGTACCTGCTGGAGAACAGGCCAATTCTGTACAGgtacattgtg ... gcatgtgcagCCAATTGGAAATATTGCTGAAAGATTTCATGCTTTGTGCGTGAAGGATAGT
EST: TTGAAGCCACAGCCATAGTACCTGCTGGAGAACAGGCCAATTCTGTACAG CCAATTGGAAATATTGCTGAAAGATTTCATGCTTTGTGCGTGAAGGATAGTEST: gi|192299707|gb|FG990031.1|FG990031
genomic: TTGAAGCCACAGCCATAGTACCTGCTGGAGAACAGGCCAATTCTGTACAGgtacattgtg ... gcatgtgcagCCAATTGGAAATATTGCTGAAAGATTTCATGCTTTGTGCGTGAAGGATAGT
EST: TTGAAGCCACAGCCATAGTACCTGCTGGAGAACAGGCCAATTCTGTACAG CCAATTGGAAATATTGCTGAAAGATTTCATGCTTTGTGCGTGAAGGATAGT
genomic: TTGAAGCCACAGCCATAGTACCTGCTGGAGAACAGGCCAATTCTGTACAGgtacattgtg ... gcatgtgcagCCAATTGGAAATATTGCTGAAAGATTTCATGCTTTGTGCGTGAAGGATAGT
actacaaaataacttgttggcattggaatataactggcaccttttgcatgtgcagCCAATTGGAAATATTGCTGAAAGATTTCATGCTTTGTGCGTGAAGGATAGTGGTGTTCTATATGAGGATCCTTATATTCAG
ccttttgc CT-rich tract
aaaataactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggactagactctgttctccattgttcaacattagaaggttattactacaaaataacttgttggcattggaatataactggcaccttttgcatgtgcagCCAATTGGAAATATTGCTGAAAGATTTCATGCTTTGTGCGTGAAGGATAGTGGTGTTCTATATGAGGATCCTTATATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - gactctg
- - - - - - - -ttctcca
- - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggc