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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gccaaagactcatcatattgtatttcttttgttataaaaaaaaacaaaataaaggttctccatagtacttattgatgagggatgcttgctaatcatgtagGACGTTTTGGAGGTTGCAGAAGGTCTTTCTCATTCCTCTGTATCTGGTGCTCTGTTGAAAGTATTGATTGATGGGTTTGAATGGCTTAGGAAAGCATTAG

Basic information

species Glycine max
transcript GLYMA11G02580.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193301448|gb|FK266845.1|FK266845
EST:     TGGTGC-AAAGAGCCTTGTCTTTCTGCAATTGCTCTCCTTCTTTAGAG                         GACGTTTTGGAGGTTGCAGAAGGTCTTTCTCATTCCTCTGTATCTGGTGCT
genomic: TGGTGCAAAAGAGCCTTGTCTTTCTGCAATTGCTCTCCTTCTTTAGAGgttactattt ... aatcatgtagGACGTTTTGGAGGTTGCAGAAGGTCTTTCTCATTCCTCTGTATCTGGTGCT
EST: gi|151399522|gb|EV269393.1|EV269393
EST:     AATGGTGCAAAAGAGCCTTGTCTTTCTGCAATTGCTCTCCTTCTTTAGAG                         GACGTTTTGGAGGTTGCAGAAGGTCTTTCTCATTCCTCTGTATCTGGTGCT
genomic: AATGGTGCAAAAGAGCCTTGTCTTTCTGCAATTGCTCTCCTTCTTTAGAGgttactattt ... aatcatgtagGACGTTTTGGAGGTTGCAGAAGGTCTTTCTCATTCCTCTGTATCTGGTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaataaaggttctccatagtacttattgatgagggatgcttgctaatcatgtagGACGTTTTGGAGGTTGCAGAAGGTCTTTCTCATTCCTCTGTATCTGGTGCTCTGTTGAAAGTATTGATTGATGGGTTTGAATGGCTTAGGAAAGCATTAG
                                         tgctaat  putative branch site (score: 2)
                    tacttatt  TA-rich tract