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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctggttacttttgcattatttatgatttgtctagcagactactgtattaccacgtaccaaaagggtctgattttgaggttttattttatcttccaacaagttgagtgtcattctatttcagGCTGATCCTGCCGCCACCACAGGGGTTCAGTATGACAAGGAGTTTATTGTATGCTCTCTTGATTTGCTTTCTGGACTAGCAGAGGGTCTTGGCAGTGGGA

Basic information

species Glycine max
transcript GLYMA10G42960.1
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42960.1 (Glycine max), 3'ss of exon 19
lower sequence: AT2G16950.1 (Arabidopsis thaliana), 3'ss of exon 19
------------gttctggttacttttgcattatttatgatttgtctagcagactactgtattaccacgtaccaaaagggtctg---------attttgaggttttattttatcttccaacaagttgagtgtcattctatttcagGCTGATCCTGCCGCCACCACAGGGGTTCAGTATGACAAGGAGTTTATTGTATGCTCTCTTGATTTGCTTTCTGGACTAGCAGAGGGTCTTGGCAGTGGGA---
             |||||   | |||    | ||||| |||||     |     | | || || |  |||  ||     |  ||         |||    | |||| ||||   ||  | |||  |  || ||  |   ||  ||| | |||||||  |  |    |||| |||||||||||  || |||||||| || ||||||||||||||||||||||| || || || |||||||||||||   
gttccattcagaattctg--caatttcatctcatttaagatttagagtgacttttccagttttccttcgtcgcaggcttgcatgtacataactattgcatgcttttgttttccgtttgatcaaagttcgtttctgttgtttgtagGTTAATCCTGCTTCTGCT---GGGGCTCAGTATGACAGAGAATTTATTGTTTGTTCTCTTGATTTGCTTTCTGGACTTGCTGAAGGGCTTGGCAGTGGGATAG

upper sequence: GLYMA10G42960.1 (Glycine max), 3'ss of exon 19
lower sequence: Vv03s0038g02830.t01 (Vitis vinifera), 3'ss of exon 19
gttctggttactt--ttgcattatttatgatttgtctagcagactactgtattaccacgtaccaaaagggtctgattttgaggttttattttatcttccaacaagttgagtgtcattctatttcagGCTGATCCTGCCGCCACCACAGGGGTTCAGTATGACAAGGAGTTTATTGTATGCTCTCTTGATTTGCTTTCTGGACTAGCAGAGGGTCTTGGCAGTGGGA---
    || |||  |  | ||||||| | |   |  | ||  ||   | |  | |  || | |   |   | |   | ||  || |||| ||||                   | || |   ||||||  |||||||||  |  |    || ||||||||||| || |||||||||||||||||||| || ||||| |||||||| ||||| |||||||| |||||||   
----tgcttagctggtcgcattatatgtagctcctttaaaagttaatttgaatgacaagaatatagttgttacaacttgcagtttttgtttt-------------------gacact---tttcagATTGATCCTGCTTCAGCT---GGTGTTCAGTATGATAAAGAGTTTATTGTATGCTCTCTCGACTTGCTGTCTGGACTTGCAGAAGGTCTTGGTAGTGGGATAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327364|gb|FK019581.1|FK019581
EST:     CTGTATTTAGGAGGTGCATAAATATAATCCAGACCCAACAATTTGCTAAG                         GCTGATCCTGCCGCCACCACAGGGGTTCAGTATGACAAGGAGTTTATTGTA
genomic: CTGTATTTAGGAGGTGCATAAATATAATCCAGACCCAACAATTTGCTAAGgttctggtta ... tctatttcagGCTGATCCTGCCGCCACCACAGGGGTTCAGTATGACAAGGAGTTTATTGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgattttgaggttttattttatcttccaacaagttgagtgtcattctatttcagGCTGATCCTGCCGCCACCACAGGGGTTCAGTATGACAAGGAGTTTATTGTATGCTCTCTTGATTTGCTTTCTGGACTAGCAGAGGGTCTTGGCAGTGGGA
 gtctgat  putative branch site (score: 4)
                                            ttctatttc  putative PPT
            ttttattttatctt  TA-rich tract