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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttttacatcgtgtacaattttatcatctccattttgtattttttaattcaagatccagcaatcataattcacattttcattgcaattgcttggttctgatccaatttatatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCA

Basic information

species Glycine max
transcript GLYMA10G38590.1
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38590.1 (Glycine max), 3'ss of exon 19
lower sequence: Vv16s0022g02320.t01 (Vitis vinifera), 3'ss of exon 19
gtgagtttttacatcgtgtacaattttatcatctccattttgtattttttaattcaagatcc---agcaatcataattcacattttcattgcaattgcttggttctgatccaatttatatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCA
                                         |||  | | |||  ||   |    || || | |||  |    | ||  || |   | |||  |  |||   |||||  ||  ||||| ||||||||||||| |||||| ||||||||||| ||||||||||| || || |||||||| |||||||||||||||
-----------------------------------------gtaagtctcaatctaattactttaaggaaccttaaaacttggtatc--tggataggtttgacttggattttatttaattgctcagGTGGATGGAAGTGTGGCATCAAAGCAAGGTGTTCGATTTGTTTTTACGGATGGATCAAGGATCATATATCGTTTATCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120495856|gb|EH224023.1|EH224023
EST:     ATGGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: ATGGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
EST: gi|120494406|gb|EH222573.1|EH222573
EST:     GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTG
genomic: GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTG
EST: gi|4260048|gb|AI416544.1|AI416544
EST:     GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
EST: gi|57574855|gb|CX547830.1|CX547830
EST:     GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
EST: gi|120494277|gb|EH222444.1|EH222444
EST:     TGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: TGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
EST: gi|58020248|gb|CX706990.1|CX706990
EST:     GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
EST: gi|192333011|gb|FK024660.1|FK024660
EST:     GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
EST: gi|120494776|gb|EH222943.1|EH222943
EST:     GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
EST: gi|31310494|gb|CD395697.1|CD395697
EST:     ATGGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: ATGGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
EST: gi|58015952|gb|CX702694.1|CX702694
EST:     GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAACCAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
EST: gi|15203242|gb|BI426010.1|BI426010
EST:     GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGT
genomic: GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGT
EST: gi|120494261|gb|EH222428.1|EH222428
EST:     GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
EST: gi|10231645|gb|BE800533.1|BE800533
EST:     GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataattcacattttcattgcaattgcttggttctgatccaatttatatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGACGGTTCAAGGATTATATATCGTTTATCA
                               ttctgat  putative branch site (score: 3)
                                        aatttatatgt  TA-rich tract