Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgactgcaccgatttcttaagtgaatttttatgcttgggttgtgaattaagcttggtagttgaccaactgatacattactgaacatcattgatcttttagGCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGG

Basic information

species Glycine max
transcript GLYMA10G35210.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192303192|gb|FG997768.1|FG997768
EST:     TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATG                         GCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTGGGAAAT
genomic: TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATGgtaaatctga ... gatcttttagGCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAAT
EST: gi|298183650|gb|HO028863.1|HO028863
EST:     TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATG                         GCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAAT
genomic: TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATGgtaaatctga ... gatcttttagGCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAAT
EST: gi|207807592|gb|GD776611.1|GD776611
EST:     TTCGACTGGTCCAGCATGCCATTCGATCTGGATG                         GCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAAT
genomic: TTCGACTGGTCCAGCATGCCATTCGATCTGGATGgtaaatctga ... gatcttttagGCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAAT
EST: gi|192334521|gb|FK024480.1|FK024480
EST:     TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATG                         GCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAAT
genomic: TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATGgtaaatctga ... gatcttttagGCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAAT
EST: gi|120493752|gb|EH221919.1|EH221919
EST:     TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATG                         GCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAAT
genomic: TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATGgtaaatctga ... gatcttttagGCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAAT
EST: gi|207736250|gb|GD713529.1|GD713529
EST:     TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATG                         GCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCT
genomic: TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATGgtaaatctga ... gatcttttagGCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCT
EST: gi|208328364|gb|GE132112.1|GE132112
EST:     TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATG                         GCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAA
genomic: TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATGgtaaatctga ... gatcttttagGCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaagcttggtagttgaccaactgatacattactgaacatcattgatcttttagGCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGG
                                               tctttt  CT-rich tract
                         atacatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgactgcaccgatttcttaagtgaatttttatgcttgggttgtgaattaagcttggtagttgaccaactgatacattactgaacatcattgatcttttagGCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- -ctgcacc
- - - - - - - - - - - - - -tttatgc
- - - - - - - - - - - - - - - - - - -ggttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgaac