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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatatttttaccttctctctctctttctgccttgcatattttttatgctgataggaattgttcattttgaaatattagttattcttatgaaacagagagaggtaaagcatagttggattaaattggatgttttgtagGTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAA

Basic information

species Glycine max
transcript GLYMA10G32300.1
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32300.1 (Glycine max), 3'ss of exon 19
lower sequence: Vv05s0020g04630.t01 (Vitis vinifera), 3'ss of exon 19
gtgatatttttaccttctctctctctttctgccttgcatattttttatgctgataggaattgttcattttgaaatattagttattcttatgaaacagagagaggtaaagcatagttggattaaattggatgttttgtagGTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAA
                 |   |||  |||| | |   ||||||||| |  || || | |  |           ||||   ||  | |||||       ||||  | |||         | ||   ||  ||  ||  ||||||||||||| ||||| ||||||||||| ||||||||||| ||||||
-------------aaggtgcatctagttcttcatgtaatatttttt-tagtggtaaggacgg-----------atatctatttcttttatgt------gagaactgaag--------aaatacgatgagtgcatttcagGTGCAAAATCTGGTTGCTGAAATTGTTGACTCAAAATTGGGCAAACAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21889881|gb|BQ743094.1|BQ743094
EST:     CTTATGCTCTCCTCCTTGCTGAAAATATCTGCAACAAACTCGGAGTTAAG                         GTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAA
genomic: CTTATGCTCTCCTCCTTGCTGAAAATATCTGCAACAAACTCGGAGTTAAGgtgatatttt ... tgttttgtagGTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAA
EST: gi|6916400|gb|AW397930.1|AW397930
EST:     CTTATGCTCTCCTCCTTGCTGAAAATATCTGCAACAAACTCGGAGTTAAG                         GTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAA
genomic: CTTATGCTCTCCTCCTTGCTGAAAATATCTGCAACAAACTCGGAGTTAAGgtgatatttt ... tgttttgtagGTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttatgaaacagagagaggtaaagcatagttggattaaattggatgttttgtagGTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAA
                                  attaaatt  TA-rich tract