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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaccttccctaccactcaacaattagaagcaacaatgacagttgagatatgagctatatccatatttctcaatttaatacatttgttcagGATTGAAATGGAAACATCAGCATCTTTCCTTGAAGAAGAATGCTACAAGAAATATGGCAAGGTTGGTAAATCATTCTATTATTCGCAAGTGGCAAGTACT

Basic information

species Glycine max
transcript GLYMA09G08180.1
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G08180.1 (Glycine max), 3'ss of exon 19
lower sequence: Vv11s0016g00850.t01 (Vitis vinifera), 3'ss of exon 17
-----gtacaccttccctaccactcaacaattagaa-gcaacaatgac--agttgagatatgagctatatccatatttctcaatttaatacatttgttcagGATTGAAATGGAAACATCAGCATCTTTCCTTGAAGAAGAATGCTACAAGAAATATGGCAAGGTTGGTAAATCATTCTATTATTCGCAAGTGGCAAGTACT
     |       ||||    | |   ||  | ||| | | |  | ||    |  |||  |||    |   ||||| |  |  |||| | |  || | ||||||| |  | |||||||||||    ||||||||| | || |||||||||||||| || |||  ||| ||||| ||||||||||| ||||||||||| || 
cattggattgagctcccagttattttccatgtggaatgaagctgtaacctgatcaagaagtgattgcttctcatatatgactttttact-ctcttttgcagGATTAACTTAGAAACATCAGCCATCTTCCTTGAAAATGAGTGCTACAAGAAATACGGGAAGACTGGGAAATCCTTCTATTATTCACAAGTGGCAAGCACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgacagttgagatatgagctatatccatatttctcaatttaatacatttgttcagGATTGAAATGGAAACATCAGCATCTTTCCTTGAAGAAGAATGCTACAAGAAATATGGCAAGGTTGGTAAATCATTCTATTATTCGCAAGTGGCAAGTACT
                                    atttaat  putative branch site (score: 4)
                                              tttgttc  putative PPT
                          atatttctcaatttaa  TA-rich tract