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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcattcttgtcctttatctttgccttgacacttatctaactgcaggtatactaacataggtactattttttttttctttcttttttggcgtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGATGCTACTAAA

Basic information

species Glycine max
transcript GLYMA09G02490.2
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02490.1 (Glycine max), 3'ss of exon 19
lower sequence: Vv10s0116g00930.t01 (Vitis vinifera), 3'ss of exon 6
gtcattcttgtcctttatctttgccttga--cacttatctaactgcaggtatactaacataggtactattttttttttctttcttttttggcgtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGATGCTACTAAA
  |||| |  ||    | | | |     |  |||||||  | ||       |  |  |  |     |  ||     |||  | | |  |   ||   ||||||||||  ||||||  |||| ||| |||||||||||||||||||||||  | ||||||||  | ||||| || ||||| |||||| | || |||||
--cattttcatctcccaacctgggaaatattcacttattaaccttttcacttggtgtctgatcatttgattggcacttcaatatatgattttgtttcttcagGAGGCTCACAAGCAAAGTAGCAACTGGTTACCTCCTCCATGGGCAATTGTTGCAATGGTTGTCCTTGGCTTCAATGAGTTTATGCTCCTTCTAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7926591|gb|AW832617.1|AW832617
EST:     AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCGGCTCAG                         GAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG
genomic: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCGGCTCAGgtaaaatcaa ... gtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtatactaacataggtactattttttttttctttcttttttggcgtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGATGCTACTAAA
    tactaac  putative branch site (score: 0)
                  ctattttttttttctt  putative PPT
                tactattttttttttc  TA-rich tract