1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...gtcattcttgtcctttatctttgccttgacacttatctaactgcaggtatactaacataggtactattttttttttctttcttttttggcgtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGATGCTACTAAA
species | Glycine max |
transcript | GLYMA09G02490.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCGGCTCAG GAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATGEST: gi|51335026|gb|CO978892.1|CO978892
genomic: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCGGCTCAGgtaaaatcaa ... gtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG
EST: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCGGCTCAG GAGNCCNACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATGEST: gi|7147557|gb|AW509479.1|AW509479
genomic: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCGGCTCAGgtaaaatcaa ... gtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG
EST: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCGGCTCAG GAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG
genomic: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCGGCTCAGgtaaaatcaa ... gtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG
ggtatactaacataggtactattttttttttctttcttttttggcgtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGATGCTACTAAA
tactaac putative branch site (score: 0)
ctattttttttttctt putative PPT
tactattttttttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcattcttgtcctttatctttgccttgacacttatctaactgcaggtatactaacataggtactattttttttttctttcttttttggcgtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGATGCTACTAAA
gtcattc
- - - - - - - - - ctttgcc
- - - - - - - - - - - - - tgacact
- - - - - - - - - - - - - - - - - - - - -tgcaggt
- - - - - - - - - - - - - - - - - - - - - - - - - actaaca