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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgctcaactcaaaatttagcctttttgtgaaatcctggatgtttaacatgttcactgatttttatgtttgtctgctttctagTCTGTTCCACCAACTATATGGTATCGATTAGTGGCTGGTCTTAACGCTCAACTACGATTGGTTCGCCGTGGACATCTAAAAATAACTTTTGGCCCTGTTA

Basic information

species Glycine max
transcript GLYMA08G03550.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14259402|gb|BG882310.1|BG882310
EST:     GTCCATTCTCTCTTCATAGTGATAATATTCTTACTAGCATCATGAGTCAG                         TCTGTTCCACCAACTATATGGTATCGATTAGTGGCTGGTCTTAACGCTCAA
genomic: GTCCATTCTCTCTTCATAGTGATAATATTCTTACTAGCATCATGAGTCAGgtttgctcaa ... tgctttctagTCTGTTCCACCAACTATATGGTATCGATTAGTGGCTGGTCTTAACGCTCAA
EST: gi|208179902|gb|GD979295.1|GD979295
EST:     CCATTCTCTCTTCATAGTGATAATAATTACTTACTAGCATCATGAGTCAG                         TCTGTTCCACCAACTATATGGTATCGATTAGTGGCTGGTCTTAATGCTCAA
genomic: CCATTCTCTCTTCATAGTGATAAT-ATT-CTTACTAGCATCATGAGTCAGgtttgctcaa ... tgctttctagTCTGTTCCACCAACTATATGGTATCGATTAGTGGCTGGTCTTAACGCTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaatcctggatgtttaacatgttcactgatttttatgtttgtctgctttctagTCTGTTCCACCAACTATATGGTATCGATTAGTGGCTGGTCTTAACGCTCAACTACGATTGGTTCGCCGTGGACATCTAAAAATAACTTTTGGCCCTGTTA
                         cactgat  putative branch site (score: 3)
                                       tttgtctgctttct  putative PPT
                            tgatttttatgttt  TA-rich tract