1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...atgtccccatttttgaatttgttctttataatttttatggctgctattgctgtggtagaaacttgcataacataagaaactgatgtgtctatattctaagGTGAAAGTTGCTGACGTGAGGGAAGCACATGTACTGACGGCAACAACTTCACCAGAAACTGAATTATCAGAAATGAATCAGAAACATCAAGCTTCTTCGA
species | Glycine max |
transcript | GLYMA07G30360.2 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: GAATCGGCCAATCTGAAGATCGCGGATTAGATATTATGAAACCACTGCAG GTGAAAGTTGCTGACGTGAGGGAAGCACATGTACTGACGGCAACAACTTCAEST: gi|120533759|gb|EH261892.1|EH261892
genomic: GAATCGGCCAATCTGAAGATCGCGGATTAGATATTATGAAACCACTGCAGgtacttcaaa ... atattctaagGTGAAAGTTGCTGACGTGAGGGAAGCACATGTACTGACGGCAACAACTTCA
EST: GAATCGGCCAATCTGAAGATCGCGGATTAGATATTATGAAACCACTGCAG GTGAAAGTTGCTGACGTGAGGGAAGCACATGTACTGACGGCAACAACTTCAEST: gi|151399082|gb|EV268953.1|EV268953
genomic: GAATCGGCCAATCTGAAGATCGCGGATTAGATATTATGAAACCACTGCAGgtacttcaaa ... atattctaagGTGAAAGTTGCTGACGTGAGGGAAGCACATGTACTGACGGCAACAACTTCA
EST: GAATCGGCCAATCTGAAGATCGCGGATTAGATATTATGAAACCACTGCAG GTGAAAGTTGCTGACGTGAGGGAAGCACATGTACTGACGGCAACAACTTCAEST: gi|9259818|gb|BE347965.1|BE347965
genomic: GAATCGGCCAATCTGAAGATCGCGGATTAGATATTATGAAACCACTGCAGgtacttcaaa ... atattctaagGTGAAAGTTGCTGACGTGAGGGAAGCACATGTACTGACGGCAACAACTTCA
EST: TGAAGATCGCGGATTAGATATTATGAAACCACTGCAG GTGAAAGTTGCTGACGTGAGGGAAGCACATGTACTGACGGCAACAACTTCAEST: gi|120532647|gb|EH260780.1|EH260780
genomic: TGAAGATCGCGGATTAGATATTATGAAACCACTGCAGgtacttcaaa ... atattctaagGTGAAAGTTGCTGACGTGAGGGAAGCACATGTACTGACGGCAACAACTTCA
EST: GAATCGGCCAATCTGAAGATCGCGGATTAGATATTATGAAACCACTGCAG GTGAAAGTTGCTGACGTGAGGGAAGCACATGTACTGACGGCAACAACTTCA
genomic: GAATCGGCCAATCTGAAGATCGCGGATTAGATATTATGAAACCACTGCAGgtacttcaaa ... atattctaagGTGAAAGTTGCTGACGTGAGGGAAGCACATGTACTGACGGCAACAACTTCA
attgctgtggtagaaacttgcataacataagaaactgatgtgtctatattctaagGTGAAAGTTGCTGACGTGAGGGAAGCACATGTACTGACGGCAACAACTTCACCAGAAACTGAATTATCAGAAATGAATCAGAAACATCAAGCTTCTTCGA
aactgat putative branch site (score: 3)
tatattctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtccccatttttgaatttgttctttataatttttatggctgctattgctgtggtagaaacttgcataacataagaaactgatgtgtctatattctaagGTGAAAGTTGCTGACGTGAGGGAAGCACATGTACTGACGGCAACAACTTCACCAGAAACTGAATTATCAGAAATGAATCAGAAACATCAAGCTTCTTCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - ccccatt
- - - - - - - - - - - - - - - - - - -tggctgc
- - - - - - - - - - - - - - - - - - - - - - - ttgctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgatg