Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaagtaacaattagaatgcctacattgttaaatgggtttgcatgattttgttggtttgagctaacacgtatgcttatcaaacagGCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTACTGATTTGTATTTCCCCACTAAGTATTCTCAATCCACATTGGGGCAATTT

Basic information

species Glycine max
transcript GLYMA07G01860.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14009025|gb|BG725629.1|BG725629
EST:     CGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTGTTCCA                         GCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTAC
genomic: CGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTGTTCCAgtaagtcaag ... tatcaaacagGCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTAC
EST: gi|10231389|gb|BE800277.1|BE800277
EST:     CGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTGTTCCA                         GCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTAC
genomic: CGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTGTTCCAgtaagtcaag ... tatcaaacagGCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTAC
EST: gi|21888177|gb|BQ741390.1|BQ741390
EST:     CGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTGTTCCA                         GCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTAC
genomic: CGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTGTTCCAgtaagtcaag ... tatcaaacagGCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTAC
EST: gi|9564838|gb|BE474347.1|BE474347
EST:     CGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTGTTCCA                         GCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTAC
genomic: CGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTGTTCCAgtaagtcaag ... tatcaaacagGCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatgggtttgcatgattttgttggtttgagctaacacgtatgcttatcaaacagGCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTACTGATTTGTATTTCCCCACTAAGTATTCTCAATCCACATTGGGGCAATTT
                             agctaac  putative branch site (score: 2)
            atgatttt  TA-rich tract