1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
gtttgcattctactaacattcatcatgcaacatgtgaggaaattaaatgtgtatctcttatcaatcttaattcataacgcctagaaaaactatttgtgaagTTCAAAGGAATCTTCATTGAAGGACCTGCAAGAACTGGCTGGCCAAATATTCAGCAAGACCAAATCAGCTGAAGAAAACCGAAATGCAGAGTCTGATAAC
species | Glycine max |
transcript | GLYMA06G36130.2 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: CCCCAATCCTGTGATGTTCTTGTCAAAAAGTTGCTTCAGCAGTTGGCAAG TTCAAAGGAATCTTCATTGAAGGACCTGCAAGAACTGGCTGGCCAAATATTEST: gi|17401659|gb|BM178441.1|BM178441
genomic: CCCCAATCCTGTGATGTTCTTGTCAAAAAGTTGCTTCAGCAGTTGGCAAGgtttgcattc ... atttgtgaagTTCAAAGGAATCTTCATTGAAGGACCTGCAAGAACTGGCTGGCCAAATATT
EST: CCCCAATCCTGTGATGTTCTTGTCAAAAAGTTGCTTCAGCAGTTGGCAAG TTCAAAGGAATCTTCATTGAAGGACCTGCAAGAACTGGCTGGCCAAATATTEST: gi|13562361|gb|BG550581.1|BG550581
genomic: CCCCAATCCTGTGATGTTCTTGTCAAAAAGTTGCTTCAGCAGTTGGCAAGgtttgcattc ... atttgtgaagTTCAAAGGAATCTTCATTGAAGGACCTGCAAGAACTGGCTGGCCAAATATT
EST: CCCCAATCCTGTGATGTTCTTGTCAAAAAGTTGCTTCAGCAGTTGGCAAG TTCAAAGGAATCTTCATTGAAGGACCTGCAAGAACTGGCTGGCCAAATATT
genomic: CCCCAATCCTGTGATGTTCTTGTCAAAAAGTTGCTTCAGCAGTTGGCAAGgtttgcattc ... atttgtgaagTTCAAAGGAATCTTCATTGAAGGACCTGCAAGAACTGGCTGGCCAAATATT
atgtgtatctcttatcaatcttaattcataacgcctagaaaaactatttgtgaagTTCAAAGGAATCTTCATTGAAGGACCTGCAAGAACTGGCTGGCCAAATATTCAGCAAGACCAAATCAGCTGAAGAAAACCGAAATGCAGAGTCTGATAAC
tcataac putative branch site (score: 2)
ttatcaatcttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcattctactaacattcatcatgcaacatgtgaggaaattaaatgtgtatctcttatcaatcttaattcataacgcctagaaaaactatttgtgaagTTCAAAGGAATCTTCATTGAAGGACCTGCAAGAACTGGCTGGCCAAATATTCAGCAAGACCAAATCAGCTGAAGAAAACCGAAATGCAGAGTCTGATAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA