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gtgagtttttttggcaagttacttttgaaatctagaatgttacttcttactgattgctagtaatcattttgctagGAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAATCTAAGAAGTGTCATGGATAT
species | Glycine max |
transcript | GLYMA06G05900.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: ATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTT AEST: gi|208316155|gb|GE117409.1|GE117409
genomic: ATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTTgtgagttttt ... attttgctag-
EST: ATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTT AEST: gi|192296635|gb|FG991203.1|FG991203
genomic: ATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTTgtgagttttt ... attttgctag-
EST: ATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTT GAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAAEST: gi|208110587|gb|GD910489.1|GD910489
genomic: ATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTTgtgagttttt ... attttgctagGAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAA
EST: GGAACATCTTCTGTAAGTTT GAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAEST: gi|208071387|gb|GD872988.1|GD872988
genomic: GGAACATCTTCTG-AAG-TTgtgagttttt ... attttgctagGAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAA
EST: ATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTT GAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAA
genomic: ATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTTgtgagttttt ... attttgctagGAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAA
acttttgaaatctagaatgttacttcttactgattgctagtaatcattttgctagGAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAATCTAAGAAGTGTCATGGATAT
tactgat putative branch site (score: 2)
tcatttt putative PPT
taatcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttttttggcaagttacttttgaaatctagaatgttacttcttactgattgctagtaatcattttgctagGAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAATCTAAGAAGTGTCATGGATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA