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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctgtcccgccctccatctctattaaaagtttacaaggcacatattctaccctaatatagaatggtatagataatacaacagtgattgctggtacaatgatgatttttcatctcaaatccaagttacttgcatgggacctgttaccaagcttggaactgatctcaatttgtttgattgaatgcagGCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGTGCAGTCAAAACATTCTAGGCATTCAATGAACAAAACCTCCTCGAAGGTT

Basic information

species Glycine max
transcript GLYMA05G37800.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193407737|gb|FK372329.1|FK372329
EST:     CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAA                         GCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT
genomic: CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAAgtgagttctg ... ttgaatgcagGCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT
EST: gi|51343030|gb|CO983763.1|CO983763
EST:     CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAA                         GCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT
genomic: CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAAgtgagttctg ... ttgaatgcagGCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT
EST: gi|7286120|gb|AW598607.1|AW598607
EST:     CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAA                         GCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT
genomic: CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAAgtgagttctg ... ttgaatgcagGCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT
EST: gi|22927785|gb|BU544924.1|BU544924
EST:     CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAA                         GCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT
genomic: CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAAgtgagttctg ... ttgaatgcagGCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT
EST: gi|208104987|gb|GD904124.1|GD904124
EST:     GCTGAGAGCACAGAAAA                         GCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT
genomic: GCTGAGAGCACAGAAAAgtgagttctg ... ttgaatgcagGCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT
EST: gi|193338576|gb|FK304749.1|FK304749
EST:     CCAATGAAGGACACCGCAACCGACAACCTTCCAGCTGAGAGCACAGAAAA                         GCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT
genomic: CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAAgtgagttctg ... ttgaatgcagGCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT
EST: gi|51338374|gb|CO982240.1|CO982240
EST:     CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAA                         GCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT
genomic: CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAAgtgagttctg ... ttgaatgcagGCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgggacctgttaccaagcttggaactgatctcaatttgtttgattgaatgcagGCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGTGCAGTCAAAACATTCTAGGCATTCAATGAACAAAACCTCCTCGAAGGTT
                                  aatttgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttctgtcccgccctccatctctattaaaagtttacaaggcacatattctaccctaatatagaatggtatagataatacaacagtgattgctggtacaatgatgatttttcatctcaaatccaagttacttgcatgggacctgttaccaagcttggaactgatctcaatttgtttgattgaatgcagGCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGTGCAGTCAAAACATTCTAGGCATTCAATGAACAAAACCTCCTCGAAGGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC