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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgcagcctatgctctaatgcattttttaatggatttaattgagtgacattattcagcatatgtcagattatagtgaaccaaaaataatttttcttattacacagttccttgtacatgaaacacaacacagAGCATGACCCTCCATACTGGAGAGGCCCAGTTTGGATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG

Basic information

species Glycine max
transcript GLYMA05G27900.2
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G27900.2 (Glycine max), 3'ss of exon 19
lower sequence: LOC_Os01g69210.1 (Oryza sativa), 3'ss of exon 19
gtctgcagcctatgctctaatgcattttttaatggatttaattgagtgacattattcagcatatgtcagattatagtgaaccaaaaataatttttcttattacacagttccttgtacatgaaacacaacacagAGCATGACCCTCCATACTGGAGAGGCCCAGTTTGGATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG
       || | |     |||  |  |    ||     |   |   |  |||||||         |  | |||   ||| |  ||     | ||    ||    ||||||  | || ||||| | |||||| |||||||| || ||||| ||||||||  |  |||||||||||||||| ||||  |||||||||| ||| |||||           
-------gcttgttaatgaattaaaatcaacataacaatgtatacatagcattattgtttggtcttttggttactctgatctgaattatctgttgtccatggtccagTTCAATATATATGAAGCGCAACACTGAGCATGATCCCCCATATTGGAGAGGTGCCATTTGGATAAACATGAACTACATGATTCTTTCAGGACTACACCAC----------

upper sequence: GLYMA05G27900.2 (Glycine max), 3'ss of exon 19
lower sequence: Vv01s0010g03300.t01 (Vitis vinifera), 3'ss of exon 19
gtctgcagcctatgctctaatgcattttttaatggatttaattgagtgacattattcagcatatgtcagattatagtgaaccaaaaataatttttcttattacacagttccttgtacatgaaacacaacacagAGCATGACCCTCCATACTGGAGAGGCCCAGTTTGGATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG
            || | || ||||| |   ||   ||||   ||    |||    ||| | | ||       ||  | ||   |    | |||  | |||  ||||| || || ||||||||||  ||||||||||||||||| || ||||||||||| ||| ||||||| |||||||||||||| |||||||| ||||||||||||          
-----------gtgat-tattgcatat---aactaattt--ctgttgcacagctatcatcttttgctttgcaattctaaatacatgtcactttaccatat--cacagCTCATTATACATGAAACGTAACACAGAGCATGACCCACCTTACTGGAGAGGTCCAATTTGGATGAACATGAATTACAGGATTCTTTCTGCACTCCACCAT----------

upper sequence: GLYMA05G27900.2 (Glycine max), 3'ss of exon 19
lower sequence: EFJ24054 (Selaginella moellendorffii), 3'ss of exon 20
gtctgcagcctatgctctaatgcattttttaatggatttaattgagtgacattattca-gcatatgtcagattatagtgaaccaaaaataatttttcttattacacagttccttgtacatgaaacacaacacagAGCATGACCCTCCATACTGGAGAGGCCCAGTTTGGATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG
                                             ||  |  | |  | |  | |||  ||  ||  |  | | |      | ||||||  |   ||| ||  | || |  | ||  ||||| ||||||||| |||| |||||||||||||| || ||||| |||||||| ||     | |||||| | || ||| |           
---------------------------------------------gtagcgatttctacgtttttgttggaacat--ttcatcgac-----tctttcttcgtttccagCTCTATTTATAACAGACGTAACACCGAGCATGACGCTCCTTACTGGAGAGGCCCTGTATGGATCAACATGAACTATCTCGTCCTTTCATCCCTTCACTAC----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018465|gb|CX705207.1|CX705207
EST:     CGCAGCCTCTTATGGACCAACTATGGATTACGTTCTCTTGCCAAAACAAG                         AGCATGACCCTCCATATTGGAGAGGCCCAGTTTGGATAAACATGAATTACA
genomic: CGCAGCCTCTTATGGACCAACTATGGATTACGTTCTCTTGCCAAAACAAGgtctgcagcc ... cacaacacagAGCATGACCCTCCATACTGGAGAGGCCCAGTTTGGATAAACATGAATTACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaccaaaaataatttttcttattacacagttccttgtacatgaaacacaacacagAGCATGACCCTCCATACTGGAGAGGCCCAGTTTGGATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG
     aaaataatttttctta  TA-rich tract