Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgcagcctatgctctaatgcattttttaatggatttaattgagtgacattattcagcatatgtcagattatagtgaaccaaaaataatttttcttattacacagTTCCTTGTACATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGGCCCAGTTTGGATAAACATGAATTACAGAATTCTTTCAGCACTCCACCAT

Basic information

species Glycine max
transcript GLYMA05G27900.1
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G27900.1 (Glycine max), 3'ss of exon 19
lower sequence: LOC_Os01g69210.1 (Oryza sativa), 3'ss of exon 19
gtctgcagcctatgctctaatgcattttttaatggatttaattgagtgacattattcagcatatgtcagattatagtgaaccaaaaataatttttcttattacacagTTCCTTGTACATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGGCCCAGTTTGGATAAACATGAATTACAGAATTCTTTCAGCACTCCACCAT
       || | |     |||  |  |    ||     |   |   |  |||||||         |  | |||   ||| |  ||     | ||    ||    ||||||  | || ||||| | |||||| |||||||| || ||||| ||||||||  |  |||||||||||||||| ||||  |||||||||| ||| ||||| 
-------gcttgttaatgaattaaaatcaacataacaatgtatacatagcattattgtttggtcttttggttactctgatctgaattatctgttgtccatggtccagTTCAATATATATGAAGCGCAACACTGAGCATGATCCCCCATATTGGAGAGGTGCCATTTGGATAAACATGAACTACATGATTCTTTCAGGACTACACCAC

upper sequence: GLYMA05G27900.1 (Glycine max), 3'ss of exon 19
lower sequence: Vv01s0010g03300.t01 (Vitis vinifera), 3'ss of exon 19
gtctgcagcctatgctctaatgcattttttaatggatttaattgagtgacattattcagcatatgtcagattatagtgaaccaaaaataatttttcttattacacagTTCCTTGTACATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGGCCCAGTTTGGATAAACATGAATTACAGAATTCTTTCAGCACTCCACCAT
            || | || |||||    |||   ||||   ||    |||    ||| | | ||       ||  | ||   |    | |||  | |||  ||||| || || ||||||||||  ||||||||||||||||| || ||||||||||| ||| ||||||| |||||||||||||| |||||||| ||||||||||||
-----------gtgat-tattgcat---ataactaattt--ctgttgcacagctatcatcttttgctttgcaattctaaatacatgtcactttaccatat--cacagCTCATTATACATGAAACGTAACACAGAGCATGACCCACCTTACTGGAGAGGTCCAATTTGGATGAACATGAATTACAGGATTCTTTCTGCACTCCACCAT

upper sequence: GLYMA05G27900.1 (Glycine max), 3'ss of exon 19
lower sequence: EFJ24054 (Selaginella moellendorffii), 3'ss of exon 20
gtctgcagcctatgctctaatgcattttttaatggatttaattgagtgacattattca-gcatatgtcagattatagtgaaccaaaaataatttttcttattacacagTTCCTTGTACATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGGCCCAGTTTGGATAAACATGAATTACAGAATTCTTTCAGCACTCCACCAT
                                             ||  |  | |  | |  | |||  ||  | | |  | | |      | ||||||  |   ||| ||  | || |  | ||  ||||| ||||||||| |||| |||||||||||||| || ||||| |||||||| ||     | |||||| | || ||| | 
---------------------------------------------gtagcgatttctacgtttttgttgga--acatttcatcgac-----tctttcttcgtttccagCTCTATTTATAACAGACGTAACACCGAGCATGACGCTCCTTACTGGAGAGGCCCTGTATGGATCAACATGAACTATCTCGTCCTTTCATCCCTTCACTAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193534351|gb|FK491606.1|FK491606
EST:     CGCAGCCTCTTATAGACCAACTATGGATTACGTTCTCTTGCCAAAACAAG                         TTCCTTGTACATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGG
genomic: CGCAGCCTCTTATGGACCAACTATGGATTACGTTCTCTTGCCAAAACAAGgtctgcagcc ... tattacacagTTCCTTGTACATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGG
EST: gi|7041994|gb|AW471888.1|AW471888
EST:     TCTTGCCAAAACAAG                         TTCCTTGTACATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGG
genomic: TCTTGCCAAAACAAGgtctgcagcc ... tattacacagTTCCTTGTACATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGG
EST: gi|193399812|gb|FK363589.1|FK363589
EST:     CGCAGCCTCTTATGGACCAACTATGGATTACGTTCTCTTGCCAAAACAAG                         TTCCTTGTACATGAAACACAACACAAGAAGACAATGACCCTCCATA
genomic: CGCAGCCTCTTATGGACCAACTATGGATTACGTTCTCTTGCCAAAACAAGgtctgcagcc ... tattacacagTTCCTTGTACATGAAACACAACACA-GA-G-CA-TGACCCTCCATA
EST: gi|193714866|gb|FK652805.1|FK652805
EST:     CAGCCTCTTATGGACCAACTATGGATTACGTTCTCTTGACCAAAAACAAG                         TTCCTTGTACA
genomic: CAGCCTCTTATGGACCAACTATGGATTACGTTCTCTTG-CCAAAA-CAAGgtctgcagcc ... tattacacagTTCCTTGTACA
EST: gi|51334717|gb|CO978583.1|CO978583
EST:     CGCAGCCTCTTATGGACCAACTATGGATTACGTTCTCTTGCCAAAACAAG                         TTCCTTGTACATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGG
genomic: CGCAGCCTCTTATGGACCAACTATGGATTACGTTCTCTTGCCAAAACAAGgtctgcagcc ... tattacacagTTCCTTGTACATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGG
EST: gi|254323179|gb|GR835787.1|GR835787
EST:     CGCAGCCTCTTATGGACCAACTATGGATTACGTTCTCTTGCCAAAACAAG                         TTCCTTGTACATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGG
genomic: CGCAGCCTCTTATGGACCAACTATGGATTACGTTCTCTTGCCAAAACAAGgtctgcagcc ... tattacacagTTCCTTGTACATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGG
EST: gi|13788695|gb|BG651286.1|BG651286
EST:     CGCAGCCTCTTATGGACCAACTATGGATTACGTTCTCTTGCCAAAACAAG                         TTCCTTGTACATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGG
genomic: CGCAGCCTCTTATGGACCAACTATGGATTACGTTCTCTTGCCAAAACAAGgtctgcagcc ... tattacacagTTCCTTGTACATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGG
EST: gi|193460590|gb|FK428031.1|FK428031
EST:     CGCAGCCTCTTATGGACCAACTATGGATTACGTTCTCTTGCCAAAACAAG                         TTCCTTGTACATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGG
genomic: CGCAGCCTCTTATGGACCAACTATGGATTACGTTCTCTTGCCAAAACAAGgtctgcagcc ... tattacacagTTCCTTGTACATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGG
EST: gi|5126438|gb|AI748174.1|AI748174
EST:     CGCAGCCTCTTATGGACCAACTATGGATTACGTTCTCTTGCCAAAACAAG                         TTCCCTGTACATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGG
genomic: CGCAGCCTCTTATGGACCAACTATGGATTACGTTCTCTTGCCAAAACAAGgtctgcagcc ... tattacacagTTCCTTGTACATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcagcatatgtcagattatagtgaaccaaaaataatttttcttattacacagTTCCTTGTACATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGGCCCAGTTTGGATAAACATGAATTACAGAATTCTTTCAGCACTCCACCAT
                                      tttttcttatt  CT-rich tract
                          aaccaaaaataatttt  TA-rich tract