1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtaagccttttaacttaagggtattgttttgtattgattcattggatgtaactttactagctttgtttcagGTTGACAGCATGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGCACGA
species | Glycine max |
transcript | GLYMA05G03270.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: TTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAG GTTGACAGCATGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCATGEST: gi|27425980|gb|CA937500.1|CA937500
genomic: TTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAGgtaagccttt ... tttgtttcagGTTGACAGCATGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCATG
EST: TTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAG GTTGACAGCATGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCATGEST: gi|26268110|gb|CA819173.1|CA819173
genomic: TTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAGgtaagccttt ... tttgtttcagGTTGACAGCATGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCATG
EST: TTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAG GTTGACAGCATGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCATGEST: gi|10844689|gb|BF067915.1|BF067915
genomic: TTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAGgtaagccttt ... tttgtttcagGTTGACAGCATGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCATG
EST: TTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAG GTTGACAGCATGTTGGGTTCGTAGGGAAAACCCAGGAGAGCATGAGGCCATEST: gi|207835662|gb|GD805659.1|GD805659
genomic: TTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAGgtaagccttt ... tttgtttcagGTTGACAGCATGTTGGGT-CGTAGGGAAAACCCAGGAGAGCATGAGGCCAT
EST: TTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAG GTTGACAGCATGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCATGEST: gi|192328312|gb|FK020023.1|FK020023
genomic: TTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAGgtaagccttt ... tttgtttcagGTTGACAGCATGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCATG
EST: TTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAG GTTGACAGCATGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCATGEST: gi|26048337|gb|CA784840.1|CA784840
genomic: TTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAGgtaagccttt ... tttgtttcagGTTGACAGCATGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCATG
EST: TTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAG GTTGACAGCATGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCATGEST: gi|208092591|gb|GD885568.1|GD885568
genomic: TTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAGgtaagccttt ... tttgtttcagGTTGACAGCATGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCATG
EST: TTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAG GTTGACAGACAATGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCA
genomic: TTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAGgtaagccttt ... tttgtttcagGTTGACAG-CA-TGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCA
aagggtattgttttgtattgattcattggatgtaactttactagctttgtttcagGTTGACAGCATGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGCACGA
atgtaac putative branch site (score: 3)
ctttgtttc putative PPT
tattgttttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccttttaacttaagggtattgttttgtattgattcattggatgtaactttactagctttgtttcagGTTGACAGCATGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGCACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG