1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtaattctaatctttctaaggtggattatttgcttcagtggtcaattttctgactgttttatgggtactttgtatgattccagAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGAATGGGGCCTCTTTGCACGAAGAAATATTCAAGAAGGAGACATG
species | Glycine max |
transcript | GLYMA04G41500.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: ATGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCACTTGCAG AGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGAATGGEST: gi|51345213|gb|CO985946.1|CO985946
genomic: ATGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCACTTGCAGgtaattctaa ... atgattccagAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGAATGG
EST: ATGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCACTTGCAG AGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGAATGGEST: gi|9204124|gb|BE330348.1|BE330348
genomic: ATGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCACTTGCAGgtaattctaa ... atgattccagAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGAATGG
EST: ATGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCACTTGCAG AGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGAATGGEST: gi|51336033|gb|CO979899.1|CO979899
genomic: ATGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCACTTGCAGgtaattctaa ... atgattccagAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGAATGG
EST: ATGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCACTTGCAG AGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGAATGG
genomic: ATGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCACTTGCAGgtaattctaa ... atgattccagAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGAATGG
tttgcttcagtggtcaattttctgactgttttatgggtactttgtatgattccagAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGAATGGGGCCTCTTTGCACGAAGAAATATTCAAGAAGGAGACATG
ttctgac putative branch site (score: 2)
tcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattctaatctttctaaggtggattatttgcttcagtggtcaattttctgactgttttatgggtactttgtatgattccagAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGAATGGGGCCTCTTTGCACGAAGAAATATTCAAGAAGGAGACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA