1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...actaatagtattttaaatttttaacctagggttgttatcccccatggtagaagcagttaaggaaaaataactgtacttagtacttacctttttgctgcagTTCATGACTGCTGAGCACCAATATATTTCACGGAAAAATGAAGGTGACAAAATTATAGTCTTCGAAAGGGGCAACCTCATCTTTGTCTTCAATTTTCATT
species | Glycine max |
transcript | GLYMA03G35020.2 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: GGATGCAAGAATTTGATCAGGCCATGCAGCATCTAGAAGAAAAGTTTGGT TTCATGACTGCTGAGCACCAATATATTTCACGGAAAAATGAAGGTGACAAAEST: gi|151398683|gb|EV268554.1|EV268554
genomic: GGATGCAAGAATTTGATCAGGCCATGCAGCATCTAGAAGAAAAGTTTGGTgtaagtcttc ... tttgctgcagTTCATGACTGCTGAGCACCAATATATTTCACGGAAAAATGAAGGTGACAAA
EST: GGATGCAAGAATTTGATCAGGCCATGCAGCATCTAGAAGAAAAGTTTGGT TTCATGACTGCTGAGCACCAATATATTTCACGGEST: gi|18040842|gb|BM309136.1|BM309136
genomic: GGATGCAAGAATTTGATCAGGCCATGCAGCATCTAGAAGAAAAGTTTGGTgtaagtcttc ... tttgctgcagTTCATGACTGCTGAGCACCAATATATTTCACGG
EST: GGATGCAAGAATTTGATCAGGCCATGCAGCATCTAGAAGAAAAGTTTGGT TTCATGACTGCTGAGCACCAATATATTTCACGGAAAAATGAAGGTGACAAAEST: gi|15662274|gb|BI699645.1|BI699645
genomic: GGATGCAAGAATTTGATCAGGCCATGCAGCATCTAGAAGAAAAGTTTGGTgtaagtcttc ... tttgctgcagTTCATGACTGCTGAGCACCAATATATTTCACGGAAAAATGAAGGTGACAAA
EST: GGATG-TTTAATTTGATCAGGCCATGCAGCATCTAGAAGAAAAGTTTGGT TTCATGACTGCTGAGCACCAATATATTTCACGGAAAAATGAAGGTGACAAAEST: gi|10236612|gb|BE805500.1|BE805500
genomic: GGATGCAAGAATTTGATCAGGCCATGCAGCATCTAGAAGAAAAGTTTGGTgtaagtcttc ... tttgctgcagTTCATGACTGCTGAGCACCAATATATTTCACGGAAAAATGAAGGTGACAAA
EST: GGATGCAAGAATTTGATCAGGCCATGCAGCATCTAGAAGAAAAGTTTGGT TTCATGACTGCTGAGCACCAATATATTTCACGGAAAAATGAAGGTGACAAA
genomic: GGATGCAAGAATTTGATCAGGCCATGCAGCATCTAGAAGAAAAGTTTGGTgtaagtcttc ... tttgctgcagTTCATGACTGCTGAGCACCAATATATTTCACGGAAAAATGAAGGTGACAAA
ggtagaagcagttaaggaaaaataactgtacttagtacttacctttttgctgcagTTCATGACTGCTGAGCACCAATATATTTCACGGAAAAATGAAGGTGACAAAATTATAGTCTTCGAAAGGGGCAACCTCATCTTTGTCTTCAATTTTCATT
tacttac putative branch site (score: 1)
cttacctttttgct CT-rich tract
ttaaggaaaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actaatagtattttaaatttttaacctagggttgttatcccccatggtagaagcagttaaggaaaaataactgtacttagtacttacctttttgctgcagTTCATGACTGCTGAGCACCAATATATTTCACGGAAAAATGAAGGTGACAAAATTATAGTCTTCGAAAGGGGCAACCTCATCTTTGTCTTCAATTTTCATT
- - - - - - - - - - - - - - gggttgt
- - - - - - - - - - - - - - - - - - atccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtact