1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gttgtaaacatgttctattaccatatttcctgttcttcattttttgaaatgtttggtgcaggttcttattgtttacgtattggaattttgcaattcctcacttgctcccgaagttaactgaatctgctcacttgctgtagGTAGAAAGTATATTTCCTCAAACCCATGCAGCATCAGAGATGTTCTAAGGCTGAAGACATTACAACACTGGTCTGATGATATGAACCAGATACATACTAT
species | Glycine max |
transcript | GLYMA03G07460.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: AAGTAGTAGACAAATAAGATGCCAGTGGCATTCGTTTCATACACAATGAG GTAGAAAGTATATTTCCTCAAACCCATGCAGCATCAGAGATGTTCTAAGGCEST: gi|58017264|gb|CX704006.1|CX704006
genomic: AAGTAGTAGACAAATAAGATGCCAGTGGCATTCGTTTCATACACAATGAGgttgtaaaca ... cttgctgtagGTAGAAAGTATATTTCCTCAAACCCATGCAGCATCAGAGATGTTCTAAGGC
EST: AAGTAGTAGACAAATAAGATGCCAGTGGCATTCGTTTCATACACAATGAG GTAGAAAGTATATTTCCTCAAACCCATGCAGCATCAGAGATGTTCTAAGGCEST: gi|151401309|gb|EV271123.1|EV271123
genomic: AAGTAGTAGACAAATAAGATGCCAGTGGCATTCGTTTCATACACAATGAGgttgtaaaca ... cttgctgtagGTAGAAAGTATATTTCCTCAAACCCATGCAGCATCAGAGATGTTCTAAGGC
EST: AAGTAGTAGACAAATAAGATGCCAGTGGCATTCGTTTCATACACAATGAG GTAGAAAGTATATTTCCTCAAACCCATGCAGCATCAGAGATGTTCTAAGGCEST: gi|209715614|gb|BW657381.1|BW657381
genomic: AAGTAGTAGACAAATAAGATGCCAGTGGCATTCGTTTCATACACAATGAGgttgtaaaca ... cttgctgtagGTAGAAAGTATATTTCCTCAAACCCATGCAGCATCAGAGATGTTCTAAGGC
EST: AAGTAGTAGACAAATAAGATGCCAGTGGCATTCGTTTCATACACAATGAG GTAGAAAGTATATTTCCTCAAACCCATGCAGCATCAGAGATGTACTAAGGCEST: gi|209720325|gb|BW669272.1|BW669272
genomic: AAGTAGTAGACAAATAAGATGCCAGTGGCATTCGTTTCATACACAATGAGgttgtaaaca ... cttgctgtagGTAGAAAGTATATTTCCTCAAACCCATGCAGCATCAGAGATGTTCTAAGGC
EST: AAGTAGTAGACAAATAAGATGCCAGTGGCATTCGTTTCATACACAATGAG GTAGAAAGTATATTTCCTCAAACCCATGCAGCATCAGAGATGTACTAAGGCEST: gi|58019743|gb|CX706485.1|CX706485
genomic: AAGTAGTAGACAAATAAGATGCCAGTGGCATTCGTTTCATACACAATGAGgttgtaaaca ... cttgctgtagGTAGAAAGTATATTTCCTCAAACCCATGCAGCATCAGAGATGTTCTAAGGC
EST: AAGTAGTAGACAAATAAGATGCCAGTGGCATTCGTTTCATACACAATGAG GTAGAAAGTATATTTCCTCAAACCCATGCAGCATCAGAGATGTTCTAAGGCEST: gi|14126159|gb|BG790597.1|BG790597
genomic: AAGTAGTAGACAAATAAGATGCCAGTGGCATTCGTTTCATACACAATGAGgttgtaaaca ... cttgctgtagGTAGAAAGTATATTTCCTCAAACCCATGCAGCATCAGAGATGTTCTAAGGC
EST: AAGTAGTAGACAAATAAGATGCCAGTGGCATTCGTTTCATACACAATGAG GTAGAAAGTATATTTNCTCAAACCCATGCAGCATCAGAGATGTACTAAGGCEST: gi|214009153|gb|DB990569.1|DB990569
genomic: AAGTAGTAGACAAATAAGATGCCAGTGGCATTCGTTTCATACACAATGAGgttgtaaaca ... cttgctgtagGTAGAAAGTATATTTCCTCAAACCCATGCAGCATCAGAGATGTTCTAAGGC
EST: AAGTAGTAGACAAATAAGATGCCAGTGGCATTCGTTTCATACACAATGAG GTAGAAAGTATATTTCCTCAAACCCATGCAGCATCAGAGATGTACTAAGGCEST: gi|57574541|gb|CX547516.1|CX547516
genomic: AAGTAGTAGACAAATAAGATGCCAGTGGCATTCGTTTCATACACAATGAGgttgtaaaca ... cttgctgtagGTAGAAAGTATATTTCCTCAAACCCATGCAGCATCAGAGATGTTCTAAGGC
EST: AAGTAGTAGACAAATAAGATGCCAGTGGCATTCGTTTCATACACAATGAG GTAGAAAGTATATTTCCTCAAACCCATGCAGCATCAGAGATGTTCTAAGGC
genomic: AAGTAGTAGACAAATAAGATGCCAGTGGCATTCGTTTCATACACAATGAGgttgtaaaca ... cttgctgtagGTAGAAAGTATATTTCCTCAAACCCATGCAGCATCAGAGATGTTCTAAGGC
ttttgcaattcctcacttgctcccgaagttaactgaatctgctcacttgctgtagGTAGAAAGTATATTTCCTCAAACCCATGCAGCATCAGAGATGTTCTAAGGCTGAAGACATTACAACACTGGTCTGATGATATGAACCAGATACATACTAT
tgctcac putative branch site (score: 2)
ctcactt CT-rich tract
aagttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtaaacatgttctattaccatatttcctgttcttcattttttgaaatgtttggtgcaggttcttattgtttacgtattggaattttgcaattcctcacttgctcccgaagttaactgaatctgctcacttgctgtagGTAGAAAGTATATTTCCTCAAACCCATGCAGCATCAGAGATGTTCTAAGGCTGAAGACATTACAACACTGGTCTGATGATATGAACCAGATACATACTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA