Sequence
atgc intronic sequence ATGC exonic sequence...attactttggtatgttcaatgaaatcaccattttgatgaatatctcttgctttggaagagatttgacttctgatacattgaattttcttcttggtgatagGAAGCTGTGCATCAAACTGTCAGTGTGATATTTGAAGATCCTGGTGTCCAGGAGTTACTGGTGAAGCTATATCAGAAAG
Basic information
species | Glycine max |
transcript | GLYMA03G03120.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G03120.1 (Glycine max), 3'ss of exon 19
lower sequence: Vv03s0097g00670.t01 (Vitis vinifera), 3'ss of exon 18
attactttggtatgt-tcaatgaaatcaccattttgatgaatatctcttgctttggaagagatttgacttctgatacattgaattttcttcttggtgatagGAAGCTGTGCATCAAACTGTCAGTGTGATATTTGAAGATCCTGGTGTCCAGGAGTTACTGGTGAAGCTATATCAGAAAG
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tttatttcttcatgtaccatttggaatgttatagctattattcatattggatttagcatc-atatatcttggagaactattgaattgcttattgatggtagGAAGCTGTGCATCAAACTGTGAGTGTTATATTTGAAGACCCAGGAGTTCAAGAGTTACTTGTCAAGCTGTACCAGAAAG
upper sequence: GLYMA03G03120.1 (Glycine max), 3'ss of exon 19
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 3'ss of exon 18
-attactttggtatgttcaatgaaatcaccattttgatgaatatctcttgctttggaagagatttgacttctgatacattgaattttcttcttggtgatagGAAGCTGTGCATCAAACTGTCAGTGTGATATTTGAAGATCCTGGTGTCCAGGAGTTACTGGTGAAGCTATATCAGAAAG
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tcttcatgtaccacttggaatgttatagctattattcatattggatttagcatcatat-agcttggagaacattttttattaaattgcttattgatggtagGAAGCTGTGCATCAAACTGTGAGTGTTATATTTGAAGACCCAGGAGTGCAAGAGTTACTTGTCAAGCTTTATCAGAAAG
upper sequence: GLYMA03G03120.1 (Glycine max), 3'ss of exon 19
lower sequence: EFJ12004 (Selaginella moellendorffii), 3'ss of exon 17
attactttggtatgttcaatgaaatcaccattttgatgaatatctcttgctttggaagagatttgacttctgatacattga--attttcttcttggtgatagGAAGCTGTGCATCAAACTGTCAGTGTGATATTTGAAGATCCTGGTGTCCAGGAGTTACTGGTGAAGCTATATCAGAAAG
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--------------------------------------------------gtgaggagggagatgatgtagaatgaggcgatgacaaagtgcattctcgtagGAAGCTGTCCAACAAACCGTGAGGGTGATTTTTGAAGATCCTGGAGTAAAGGAGCTACTTGTCAAACTTTATCAGAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14990484|gb|BI316157.1|BI316157EST: GTTAATTTTGAAGATACCTGTAAGGGATTTCTTGAGGTAGCTAAG GAAGCTGTGCATCAAACTGTCAGTGTGATATTTGAAGATCCTGGTGTCCAG
genomic: GTTAATTTTGAAGATACCTGTAAGGGATTTCTTGAGGTAGCTAAGgtatgaaaga ... ttggtgatagGAAGCTGTGCATCAAACTGTCAGTGTGATATTTGAAGATCCTGGTGTCCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttgctttggaagagatttgacttctgatacattgaattttcttcttggtgatagGAAGCTGTGCATCAAACTGTCAGTGTGATATTTGAAGATCCTGGTGTCCAGGAGTTACTGGTGAAGCTATATCAGAAAG
ttctgat putative branch site (score: 3)
ttttcttctt putative PPT
atacattgaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attactttggtatgttcaatgaaatcaccattttgatgaatatctcttgctttggaagagatttgacttctgatacattgaattttcttcttggtgatagGAAGCTGTGCATCAAACTGTCAGTGTGATATTTGAAGATCCTGGTGTCCAGGAGTTACTGGTGAAGCTATATCAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC