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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcttttaatctagatttttaggctactgagctttccgccttatcagttttataactgcgtaaccctttcttttgaacttttggcagTTCCAACCTGTGCTGGTAAAGCAAGATCAGGACAAAACAGAGAATCGGAAATCAGGAAAACGTAATATTGCACGCACTCAGGTTAATCCAAACTCTGATC

Basic information

species Glycine max
transcript GLYMA02G01060.2
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6847020|gb|AW349310.1|AW349310
EST:     TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTATATCAG                         TTCCAACCTGTGCTGGTAAAGCAAGATCAGGACAAAACAGAGAATCGGAAA
genomic: TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTATATCAGgtttgctttt ... cttttggcagTTCCAACCTGTGCTGGTAAAGCAAGATCAGGACAAAACAGAGAATCGGAAA
EST: gi|22930133|gb|BU547272.1|BU547272
EST:     TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTATATCAG                         TTCCAACCTGTGCTGGTAAAGCAAGATCAGGACAAAACAGAGAATCGGAAA
genomic: TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTATATCAGgtttgctttt ... cttttggcagTTCCAACCTGTGCTGGTAAAGCAAGATCAGGACAAAACAGAGAATCGGAAA
EST: gi|31468527|gb|CD410555.1|CD410555
EST:     TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTATATCAG                         TTCCAACCTGTGCTGGTAAAGCAAGATCAGGACCAAACAGAGAATCGGAAA
genomic: TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTATATCAGgtttgctttt ... cttttggcagTTCCAACCTGTGCTGGTAAAGCAAGATCAGGACAAAACAGAGAATCGGAAA
EST: gi|31308594|gb|CD393797.1|CD393797
EST:     TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTATATCAG                         TTCCAACCTGTGCTGGTAAAGCAAGATCAGGACNAAACAGAGAATCGGAAA
genomic: TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTATATCAGgtttgctttt ... cttttggcagTTCCAACCTGTGCTGGTAAAGCAAGATCAGGACAAAACAGAGAATCGGAAA
EST: gi|6724938|gb|AW309337.1|AW309337
EST:     TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTATATCAG                         TTCCAACCTGTGCTGGTAAAGCAAGATCAGGACAAAACAGAGAATCGGAAA
genomic: TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTATATCAGgtttgctttt ... cttttggcagTTCCAACCTGTGCTGGTAAAGCAAGATCAGGACAAAACAGAGAATCGGAAA
EST: gi|193322946|gb|FK292024.1|FK292024
EST:     TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTATATCAG                         TTCCAACCTGTGCTGGTAAAGCAAGATCAGGACAAAACAGAGAATCGGAAA
genomic: TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTATATCAGgtttgctttt ... cttttggcagTTCCAACCTGTGCTGGTAAAGCAAGATCAGGACAAAACAGAGAATCGGAAA
EST: gi|208140910|gb|GD935252.1|GD935252
EST:     TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTATATCAG                         TTCCAACCTGTGCTGGTAAAGCAAGATCAGGACAAAACAGAGAATCGGAAA
genomic: TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTATATCAGgtttgctttt ... cttttggcagTTCCAACCTGTGCTGGTAAAGCAAGATCAGGACAAAACAGAGAATCGGAAA
EST: gi|4294358|gb|AI442179.1|AI442179
EST:     TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTATAT-AG                         TTCCAACCTGTGCTGGTAAAGCAA-ATCAGGACAAAACAGAGAATCGGAAA
genomic: TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTATATCAGgtttgctttt ... cttttggcagTTCCAACCTGTGCTGGTAAAGCAAGATCAGGACAAAACAGAGAATCGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccgccttatcagttttataactgcgtaaccctttcttttgaacttttggcagTTCCAACCTGTGCTGGTAAAGCAAGATCAGGACAAAACAGAGAATCGGAAATCAGGAAAACGTAATATTGCACGCACTCAGGTTAATCCAAACTCTGATC
                                             ctttt  CT-rich tract
        ttatcagttttataa  TA-rich tract