Sequence
atgc intronic sequence ATGC exonic sequence...ctcaagatcttggaaagtggaaagcttctagctacctgagaatataaatctaaacctctctgatttgcttcaattatggttcctgtttctcttcatgcagGGTACGAGTCGTCCAGCTCATTATCATGTTCTGTGGGATGAAAACAACTTCACAGCAGATGGAATTCAGTCTTTGACAAACAATCTCTGTTATACATATG
Basic information
species | Glycine max |
transcript | GLYMA02G00510.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G00510.1 (Glycine max), 3'ss of exon 19
lower sequence: GRMZM2G079080_T02 (Zea mays), 3'ss of exon 19
--ctcaagatcttggaaagtggaaagctt---ctagctacctgagaatataaatctaaacctctctgatttgcttcaattatggttcctgtttctcttcatgcagGGTACGAGTCGTCCAGCTCATTATCATGTTCTGTGGGATGAAAACAACTTCACAGCAGATGGAATTCAGTCTTTGACAAACAATCTCTGTTATACATATG
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atcatgtgattgtacagcttatggtacttggatcagtagcatgggaatgtag-tcagactctccgtactatactggaat---gactgatgtgtgagtttgc-cagGGAACGAGTAGGCCTGCTCACTACCATGTCCTCTGGGATGAGAACAATTTCACAGCAGACGAAATGCAGACATTGACAAACAACCTTTGCTACAC-----
upper sequence: GLYMA02G00510.1 (Glycine max), 3'ss of exon 19
lower sequence: AT5G43810.2 (Arabidopsis thaliana), 3'ss of exon 19
ctcaagatcttggaaagtggaaagcttctagctacctgagaatataaatctaaacctctctgatttgcttcaattatggttcctgtttctcttc----atgcagGGTACGAGTCGTCCAGCTCATTATCATGTTCTGTGGGATGAAAACAACTTCACAGCAGATGGAATTCAGTCTTTGACAAACAATCTCTGTTATACATATG
| | | || || | || | | ||||| | | | | || | | ||| | | ||| | | || || |||| || || | || || ||||| |||||||| ||||| || ||||| |||||||||||||| ||||| ||| |||| ||||||||||||||||| ||||
------------gtacgaaacaactatcgaaatatccgttaatatgaccttttccgtaactatacagataaaatgacactgtttgtgtttgttgtatgatctagGGAACAAGCAGGCCTGCACATTACCATGTTCTTTGGGACGAGAACAATTTCACAGCAGATGGTATTCAATCTCTGACTAACAATCTCTGTTATACCTATG
upper sequence: GLYMA02G00510.1 (Glycine max), 3'ss of exon 19
lower sequence: Vv05s0020g04190.t01 (Vitis vinifera), 3'ss of exon 17
-ctcaagatcttggaaagtggaaagcttctagctacctgagaatataaa-tctaaacctctctgatttgcttcaattatggttcctgtttctcttcatgcagGGTACGAGTCGTCCAGCTCATTATCATGTTCTGTGGGATGAAAACAACTTCACAGCAGATGGAATTCAGTCTTTGACAAACAATCTCTGTTATACATATG
| || | | | | | || | | || || | | | | || || | | | || || ||||| | |||||| || ||| | || |||||||| |||||| | |||||||| ||||| |||||||||||||||||||| || ||||| |||||||| || || |||||||
aacactcactttaggaggctctcatttgtcagtttctaactaacatgtgctttcagaacttttggaatggatgagtcattattttc-tttctttgtg-gcagGGGACAAGTAGGCCTGCTCATTACCATGTTTTATGGGATGAGAACAATTTCACAGCAGATGGAATTCAATCCTTGACGAACAATCTTTGCTACACATATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatctaaacctctctgatttgcttcaattatggttcctgtttctcttcatgcagGGTACGAGTCGTCCAGCTCATTATCATGTTCTGTGGGATGAAAACAACTTCACAGCAGATGGAATTCAGTCTTTGACAAACAATCTCTGTTATACATATG
ttcctgtttctcttca CT-rich tract
ttcaattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctcaagatcttggaaagtggaaagcttctagctacctgagaatataaatctaaacctctctgatttgcttcaattatggttcctgtttctcttcatgcagGGTACGAGTCGTCCAGCTCATTATCATGTTCTGTGGGATGAAAACAACTTCACAGCAGATGGAATTCAGTCTTTGACAAACAATCTCTGTTATACATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - -gcttcta
- - - - - - - - - - - - - - - -ctacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - cctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttca