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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttagtataacaaattatagatcatagttttttgctttagatagcatatacattgaaatggatttaatattttttatactcattaccaatgtttttcttttggaaatttgcaatgcagtacttagTGCAATCTGCTGTGGATGGTTATAATGTTTGCATATTTGCTTATGGTCAAACTGGTTCTGGAAAGACTTTTACAATCTATGGAGTTGAAAACAATCCTGG

Basic information

species Glycine max
transcript GLYMA01G35950.1
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G35950.1 (Glycine max), 3'ss of exon 19
lower sequence: LOC_Os04g57140.2 (Oryza sativa), 3'ss of exon 18
gtcttagtataacaaattatagatcatagttttttgctttagatagcatat--acattgaaatggatttaatattttttatactcattaccaatgtttttcttttggaaatttgcaatgcagtacttagTGCAATCTGCTGTGGATGGTTATAATGTTTGCATATTTGCTTATGGTCAAACTGGTTCTGGAAAGACTTTTACAATCTATGGAGTTGAAAACAATCCTGG
                          |    ||||  || | |   | | |  ||||  |  ||    | | ||| |||  | |      | |||| ||| |  || || ||||  ||||||||  |||| ||||| || || ||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||  ||||||||       
-------------------------gtgaccttttttttaacacttctttttaacatacatgtgctcattagattatttgcaattggactccatgtgtttatcatg-aattttgtgatgcagTATCTAGTTCAATCGGCCGTTGATGGATATAATGTTTGTATATTTGCTTATGGGCAAACTGGTTCTGGAAAAACTTTTACAATTTATGGATCTGAAAACA-------

upper sequence: GLYMA01G35950.1 (Glycine max), 3'ss of exon 19
lower sequence: GRMZM2G423861_T02 (Zea mays), 3'ss of exon 17
gtcttagtataacaaattatagatcatagttttttgctttagatagcatatacattgaaatggatttaatattttttatactcattaccaatgtttt-------tcttttggaaatttgcaatgcagtacttagTGCAATCTGCTGTGGATGGTTATAATGTTTGCATATTTGCTTATGGTCAAACTGGTTCTGGAAAGACTTTTACAATCTATGGAGTTGAAAACAATCCTGG
         | | | |||  | ||  || | |||||  || |||  |||   || | | ||  ||||  ||||| |   |||  | ||  | | |||       | | ||| |  | ||  ||||||||| | || ||||| ||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| || || |||||    || ||||       
--------gtga-atatttcaaatgcta-tcttttgtgtt-gatgccat---cagtaatataaattt--tatttctaggactgttcactgagggtttcatatgatgtgttgaatttatgtgatgcagTACCTGGTACAATCAGCTGTTGATGGATATAACGTTTGCATATTTGCATATGGTCAAACTGGTTCTGGAAAGACTTTCACTATTTATGGTTCAGATAACA-------

upper sequence: GLYMA01G35950.1 (Glycine max), 3'ss of exon 19
lower sequence: GRMZM2G070273_T01 (Zea mays), 3'ss of exon 17
gtcttagtataacaaattatagatcatagttttttgctttagatagcatatacatt------gaaatgg--------atttaatattt----tttatactcattaccaatgtttt----tcttttggaaatttgcaatgcagtacttagTGCAATCTGCTGTGGATGGTTATAATGTTTGCATATTTGCTTATGGTCAAACTGGTTCTGGAAAGACTTTTACAATCTATGGAGTTGAAAACAATCCTGG
   | | |||  |||||  ||  |  |   ||  |||  | | ||  | | |  ||       | || |        || | || | |    |||||  |||||     | |  |    ||| ||| |  | ||  ||||||||  | || ||||| ||||| ||||| |||||||| || |||||||| ||||| ||||||||||||||||||||||| || || |||||    |||||||       
--gtgaatatttcaaatgctatcttttgtgttgatgccgtcggtaatacaaattttatttctaagattgttggcttcatatgatctgttgaatttatgttcattttgggtttcatatgatctgttgaatttatgtgatgcagTATCTGGTACAATCAGCTGTTGATGGATATAATGTCTGTATATTTGCGTATGGCCAAACTGGTTCTGGAAAGACTTTCACTATTTATGGTTCAGAAAACA-------

upper sequence: GLYMA01G35950.1 (Glycine max), 3'ss of exon 19
lower sequence: AT5G65930.3 (Arabidopsis thaliana), 3'ss of exon 16
gtcttagtataacaaattatagatcatagttttttgctttagatagcatatacattgaaatggatttaatattttttatactcattaccaatgtttttcttttggaaatttgcaatgcagtacttagTGCAATCTGCTGTGGATGGTTATAATGTTTGCATATTTGCTTATGGTCAAACTGGTTCTGGAAAGACTTTTACAATCTATGGAGTTGAAAACAATCCTGG
                      || || | | | |   |  | |  ||| ||| ||  |     | | || ||| || |  | | || ||  ||||| |||||              ||||| || || || || ||||| ||||| ||||| |||||||| ||||| ||||||||||||||||||||||| ||||| || || |||||   ||| | ||       
--------------------gtattattgatatgtaactgtgtt--catttacctttcatcctttgttat-tttcttgtggttactaacatcgttttccttttaa------------cagTATTTGGTACAGTCGGCTGTAGATGGGTATAACGTTTGCATCTTTGCATATGGTCAAACTGGTTCTGGAAAAACTTTCACTATATATGGGCATGAGAGCA-------

upper sequence: GLYMA01G35950.1 (Glycine max), 3'ss of exon 19
lower sequence: Vv04s0044g02020.t01 (Vitis vinifera), 3'ss of exon 18
gtcttagtataacaaattatagatcatagttttttgctttagatagcatatacattgaaatggatttaatattttttatactcattaccaatgtttttcttttggaaatttgcaatgcagtacttagTGCAATCTGCTGTGGATGGTTATAATGTTTGCATATTTGCTTATGGTCAAACTGGTTCTGGAAAGACTTTTACAATCTATGGAGTTGAAAACAATCCTGG
            ||| | | | |||||   | |||| |      |||| |    ||  | |  ||| | || |  ||  | |  |     || ||||   | |     ||   | ||||||| || || ||||| ||||| ||||| |||||||| ||||||||||| |||||||| ||||||||||||||||| || ||||| |||||   |||    |       
-----------gcaagtca-acatcatgaatgtttgtt------agca-acttgtttgattacattaattagtagttcaagttgt--gtgatattttctatgt-----ttatgattgcagTATTTGGTTCAATCGGCTGTAGATGGATATAATGTGTGCATATTTGCATATGGTCAGACTGGTTCTGGAAAGACATTCACAATTTATGGTTCTGATGGTA-------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttatactcattaccaatgtttttcttttggaaatttgcaatgcagtacttagTGCAATCTGCTGTGGATGGTTATAATGTTTGCATATTTGCTTATGGTCAAACTGGTTCTGGAAAGACTTTTACAATCTATGGAGTTGAAAACAATCCTGG
                 aatgtttttctttt  TA-rich tract