1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...tattttctttatcagcattctaatctattcattacttcataaatggtaaagttttcatttcctttgtgaagtttggaatcttataaagtgaaaattgcagGCCGCTTCCTTTGCATCACCGTCATTTGGTCGGTGCAAGTATTCAG
species | Glycine max |
transcript | GLYMA01G01230.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: CGTCGAGCATCATCATCTTGGGAAGATGAGACTGAAATAAAATCCCTTGA GCCGCTTCCTTTGCATCACCGTCATTTGGTCGGTGCAAGTATTCAGEST: gi|58024062|gb|CX710803.1|CX710803
genomic: CGTCGAGCATCATCATCTTGGGAAGATGAGACTGAAATAAAATCCCTTGAgtatgtttcc ... aaaattgcagGCCGCTTCCTTTGCATCACCGTCATTTGGTCGGTGCAAGTATTCAG
EST: CTGAAATAAAATCCCTTGA GCCGCTTCCTTTGCATCACCGTCATTTGGTCGGTGCAAGTATTCAGEST: gi|6567219|gb|AW234830.1|AW234830
genomic: CTGAAATAAAATCCCTTGAgtatgtttcc ... aaaattgcagGCCGCTTCCTTTGCATCACCGTCATTTGGTCGGTGCAAGTATTCAG
EST: CGTCGAGCATCATCATCTTGGGAAGATGAGACTGAAATAAAATCCCTTGA GCCGCTTCCTTTGCATCACCGTCATTTGGTCGGTGCAAGTATTCAGEST: gi|254321697|gb|GR825014.1|GR825014
genomic: CGTCGAGCATCATCATCTTGGGAAGATGAGACTGAAATAAAATCCCTTGAgtatgtttcc ... aaaattgcagGCCGCTTCCTTTGCATCACCGTCATTTGGTCGGTGCAAGTATTCAG
EST: CGTCGAGCATCATCATCTTGGGAAGATGAGACTGAAATAAAATCCCTTGA GCCGCTTCCTTTGCATCACCGTCATTTGGTCGEST: gi|22525698|gb|BU084509.1|BU084509
genomic: CGTCGAGCATCATCATCTTGGGAAGATGAGACTGAAATAAAATCCCTTGAgtatgtttcc ... aaaattgcagGCCGCTTCCTTTGCATCACCGTCATTTGGTCG
EST: CGTCGAGCATCATCATCTTGGGAAGATGAGACTGAAATAAAATCCCTTGA GCCGCTTCCTTTGCATCACCGTCATTTGGTCGGTGCAAGTATTCAG
genomic: CGTCGAGCATCATCATCTTGGGAAGATGAGACTGAAATAAAATCCCTTGAgtatgtttcc ... aaaattgcagGCCGCTTCCTTTGCATCACCGTCATTTGGTCGGTGCAAGTATTCAG
gtaaagttttcatttcctttgtgaagtttggaatcttataaagtgaaaattgcagGCCGCTTCCTTTGCATCACCGTCATTTGGTCGGTGCAAGTATTCAG
ttataaagtgaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattttctttatcagcattctaatctattcattacttcataaatggtaaagttttcatttcctttgtgaagtttggaatcttataaagtgaaaattgcagGCCGCTTCCTTTGCATCACCGTCATTTGGTCGGTGCAAGTATTCAG
- - - - - - - gcattct
- - - - - - - - - - - - ctattca