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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttttctctactgtttaatattattcattttattctcgaattattgtaagagtatttaatattagcgactcttatgatgcagCTGATGGAAACATTCGGATTTGGAAGGACTATACTCTTAAGGGTAAACAAAAACTTGTCACTGCATTCTCTTCAATTCATGGTCATAAACCTGGTGTGAG

Basic information

species Glycine max
transcript GLYMA18G44210.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G44210.1 (Glycine max), 3'ss of exon 18
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 18
---------------gtacttttctctactgtttaatattattcattttattc--tcgaatt----attgtaagagtatttaatattagcgactcttatg--atgcagCTGATGGAAACATTCGGATTTGGAAGGACTATACTCTTAAGGGTAAACAAAAACTTGTCACTGCATTCTCTTCAATTCATGGTCATAAACCTGGTGTGAG
                |  |||     |   ||  ||     |  ||||| |   | ||||     ||| |    | || |||  ||  |    | ||    ||| || |||||||||  ||||||||||||| || || || |||| |||| |||| |||||||| ||||||||||||||||| || ||||||| ||||||||| ||
gtaatttttgtgttgattgtttggataatgattggatggagatgtttttacttgttagaatgctagattttttatgaatctaagttttactttccctacattatgtagGTGATGGAAATGTTCGGATTTGGAAAGATTACACACTTAGGGGTCAACAGAAACTTGTAACTGCATTCTCTTCAATCCAAGGTCATAGACCTGGTGTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9901076|gb|BE610044.1|BE610044
EST:     GCTCTGCCTTGTAAATGAGCTTGATGATAGCTTGCTTCTTGCTGCTTCAT                         CTGATGGAAACATTCGGATTTGGAAGGACTATACTCTTAAGGGTAAACAAA
genomic: GCTCTGCCTTGTAAATGAGCTTGATGATAGCTTGCTTCTTGCTGCTTCATgtacttttct ... tatgatgcagCTGATGGAAACATTCGGATTTGGAAGGACTATACTCTTAAGGGTAAACAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttattctcgaattattgtaagagtatttaatattagcgactcttatgatgcagCTGATGGAAACATTCGGATTTGGAAGGACTATACTCTTAAGGGTAAACAAAAACTTGTCACTGCATTCTCTTCAATTCATGGTCATAAACCTGGTGTGAG
                          atttaat  putative branch site (score: 4)
                                         ctcttat  putative PPT
           aattattgtaagagta  TA-rich tract