1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...actctgtaatatgtatatagataaaagtgttacatcagagaattttttatgccacaagtttctcaatatagacttcttttttgtttgtcatcaaattcagGTTCCTGCTAAACCAAACTACAGTCTGGTTCTATATTATGCAGCTGACAGACCGATAAATAAAAATTCTCTGTTAGCTAAGTTTGTTGATGGAAGTGATG
species | Glycine max |
transcript | GLYMA17G11250.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TCAGAAGCTGGGAAAACGCTTCCATTTATCCTTGTCATTAATCTCCAG GTTCCTGCTAAACCAAACTACAGTCTGGTTCTATATTATGCAGCTGACAGAEST: gi|208334115|gb|GE130786.1|GE130786
genomic: TCAGAAGCTGGGAAAACGCTTCCATTTATCCTTGTCATTAATCTCCAGgtatggatgt ... tcaaattcagGTTCCTGCTAAACCAAACTACAGTCTGGTTCTATATTATGCAGCTGACAGA
EST: CTTCCATTTATCCTTGTCATTAATCTCCAG GTTCCTGCTAAACCAAACTACAGTCTGGTTCTATATTATGCAGCTGACAGAEST: gi|207840071|gb|GD809592.1|GD809592
genomic: CTTCCATTTATCCTTGTCATTAATCTCCAGgtatggatgt ... tcaaattcagGTTCCTGCTAAACCAAACTACAGTCTGGTTCTATATTATGCAGCTGACAGA
EST: AAGCCGGGAAAAAGCTTCCATTTATCCTTGTCATTAATCTCCAG GTTCCTGCTAAACCAAACTACAGTCTGGTTCTATATTATGCAGCTGACAGA
genomic: AAGCTGGGAAAACGCTTCCATTTATCCTTGTCATTAATCTCCAGgtatggatgt ... tcaaattcagGTTCCTGCTAAACCAAACTACAGTCTGGTTCTATATTATGCAGCTGACAGA
tttatgccacaagtttctcaatatagacttcttttttgtttgtcatcaaattcagGTTCCTGCTAAACCAAACTACAGTCTGGTTCTATATTATGCAGCTGACAGACCGATAAATAAAAATTCTCTGTTAGCTAAGTTTGTTGATGGAAGTGATG
ttttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actctgtaatatgtatatagataaaagtgttacatcagagaattttttatgccacaagtttctcaatatagacttcttttttgtttgtcatcaaattcagGTTCCTGCTAAACCAAACTACAGTCTGGTTCTATATTATGCAGCTGACAGACCGATAAATAAAAATTCTCTGTTAGCTAAGTTTGTTGATGGAAGTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
-ctctgta
- - - - - - - - - agataaaa
- - - - - - - - - - - - - - - - - - - - - - - - -tgccaca