Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   		31  
 5'  3'   		32  
 5'  3'   		33  
 5'  3'   		34  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgccaacttttgtttgtgctataggattttggcatatctatttgagaaatgctgtttgatataacacattgaattgcagGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAG

Basic information

species Glycine max
transcript GLYMA17G06520.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G06520.1 (Glycine max), 3'ss of exon 18
lower sequence: LOC_Os04g51610.3 (Oryza sativa), 3'ss of exon 16
gtatgccaacttttgtttgtgctataggattttggcatatctatttgagaaatgctgtttgatataacacattgaattgcagGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAG
||||||   |||  ||| ||  | |      |||  ||  ||     |   || || ||   |     | ||    ||  |||| |||||||| ||||| ||||| || ||||| ||||||||||| |||||||| || ||||| |||||  ||||| ||||||||
gtatgctcgctt--gttggtattgtgcttgcttgttattcctgcaaaatgcattctcttgagtgggtta-at--gcttatagGTCAGGAGGCTCTCTGCATGTGAAACTATGGGTTCAGCCACAACAATTTGCAGCGACAAGACAGGAACGCTGACTTTGAATCAG

upper sequence: GLYMA17G06520.1 (Glycine max), 3'ss of exon 18
lower sequence: GRMZM5G892495_T02 (Zea mays), 3'ss of exon 6
gtatgccaacttttgtttgtgctataggattttg-gcatatctatttgagaaatgctgtttgatataacacattgaattgcagGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAG
    |   |  ||| |      || |  ||  ||      || | ||   | ||| ||      || |||      ||| |||||  ||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||| |||||||| ||||| ||  | || |||
----gtacatatttctccagattagattatgctgtattcttccagttataacatgttgccaagcatgaca------atttcagGTTCGGAGGCTTTCTGCCTGTGAAACAATGGGTTCAGCGACAACTATTTGTAGTGACAAGACTGGTACATTAACATTAAACCAG

upper sequence: GLYMA17G06520.1 (Glycine max), 3'ss of exon 18
lower sequence: GRMZM2G391042_T02 (Zea mays), 3'ss of exon 16
gtatgccaacttttgtttgtgctataggattttggcatatctatttgagaaatgctgtttgatata-acacatt------gaattgcagGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAG
|| ||    |   | | | | |  | |  || |       |||  |  || ||    |   ||  | || || |      | | |  ||||||||||||||||||| || || || ||||| || |||||||| || |||||||| |||||||| || |||||  | ||||||
gtgtgttcccaactttctataccttggttttgttatgctactagctccgacatctaatgctatgaacactcacttcctatggaatatagGTGAGGAGGCTTTCTGCATGCGAAACGATGGGTTCTGCCACAACAATCTGCAGTGACAAGACTGGCACCTTGACGTTAAATCAG

upper sequence: GLYMA17G06520.1 (Glycine max), 3'ss of exon 18
lower sequence: GRMZM2G140328_T02 (Zea mays), 3'ss of exon 16
gtatgccaacttttgtttgtgctataggattttggcatatctatttga---gaaat--gctgtttgatataa-cacat----tgaattgcagGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAG
|||||    |   | | | | |  | |  ||||| |||| ||| ||||   || ||    || ||   |    ||| |    || | || |||| |||||||||||||| ||||| || ||||| || |||||||| || |||||||| |||||||| || || ||| | ||||||
gtatgttcccaactttctataccttgg--ttttgtcata-ctacttgatccgacattgaatgctttgcacgctcacttcctatggaatgtagGTCAGGAGGCTTTCTGCATGTGAAACGATGGGTTCTGCCACAACAATCTGCAGTGACAAGACTGGCACCTTAACTTTAAATCAG

upper sequence: GLYMA17G06520.1 (Glycine max), 3'ss of exon 18
lower sequence: AT5G57110.2 (Arabidopsis thaliana), 3'ss of exon 17
----------------------gtatgccaacttttgtttgtgctataggattttggcatatctatttgagaaatgctgtttgatataacaca---ttgaattgcagGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAG
                       ||| ||  ||| || ||| |    |  | | |   ||   | ||  ||   |  | | |   || ||  |   ||||  |||||||| ||||||| ||||| || ||||||||||| || ||||| || |||||||| ||||| ||||||||| | ||| ||||||||
gtatgattattttaccttctctctat-ccttcttctggttgggagggaaaaatatatgattctttttgcagttttattatatagcatgactaagatttgatatgcagGTGCGGAGGCTATCTGCTTGCGAGACAATGGGCTCTGCCACCACTATTTGCAGCGATAAAACTGGAACACTAACTCTGAATCAG

upper sequence: GLYMA17G06520.1 (Glycine max), 3'ss of exon 18
lower sequence: AT4G29900.1 (Arabidopsis thaliana), 3'ss of exon 17
gtatgccaacttttgtttgtg----ctataggattttggcatatctatttgagaaatgct-----------gtttgatataacaca-------ttgaattgcagGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAG
|||||   | |||  ||| ||      |     |||      |  ||  ||  |||| ||           || |  |  |||  |       || |||| |||||| | |||||||| |||||||| || |||||||| || ||||| ||||||||||||||||||||||| |||||  | ||  ||
gtatgtatattttaatttttgggactcaataagtttgaatgaacataaatgcaaaattcttatacgtgaatgtcttttgcaacttaaacgaattttaatttcagGTGCGTAGGCTTTCAGCCTGTGAAACCATGGGGTCTGCAACAACAATTTGCAGTGATAAGACTGGAACTTTGACCTTAAACGAG

upper sequence: GLYMA17G06520.1 (Glycine max), 3'ss of exon 18
lower sequence: Vv11s0052g00320.t01 (Vitis vinifera), 3'ss of exon 18
----------------------------gtatgccaacttttgtttgtgctataggattttggcatatctatttgagaaatgctgtttgatataacac--attgaattgcagGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAG
                            |  | |  |   || | | || |||  |  |   |  ||| | ||  | |      |  || | |||||    ||||| |||||||  ||||||||||||| |||||||| ||||| ||  |||| || ||||||||||||||||| |||||  | ||| ||||||||
gtatgtatgacaaatatttctgaactaagcttccacaagattatatatgttatgtgggtcatgagtatatgttatatatgcatcgggtggtttaacagcagttgaactgcagGTACGGAGGCTTTCTGCTTGTGAGACCATGGGCTCTTCCACGACTATTTGCAGTGATAAGACAGGAACTCTAACTTTGAATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattttggcatatctatttgagaaatgctgtttgatataacacattgaattgcagGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAG
                                  atataac  putative branch site (score: 3)
         atatctattt  TA-rich tract