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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtaacctaaacttactgattaaacaatttcaggtttagcttattcaatgtgataaatgctgctgctaatatgctgttttaaaaaaatcagCAAACACATCAGAAGAATCAGGTGAAAGATTCCATAGATGTTGATGAACCAGAAG

Basic information

species Glycine max
transcript GLYMA17G02640.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G02640.1 (Glycine max), 3'ss of exon 18
lower sequence: AT3G06400.3 (Arabidopsis thaliana), 3'ss of exon 18
gtaggt--------aacctaaac---ttactgattaaacaatttcaggtttagcttattcaatgtgataaatgctgctgctaatatgctgt-tttaaaaaaatcagCAAACACATCAGAAGAATCAGGTGAAAGATTCCATAGATGTTGATGAACCAGAAG
|||||         || | ||||   | | |  ||  |     | | |      || ||     | ||||| ||  ||       |  |||  ||       |||||||||||||||||| |||||| |||||||  | || |||||||| ||||||||||
gtaggcctctctcaaaacgaaacacttgattcctttgatgtgcttaagagcgagtttttttgccttataaaagcaacttgcttctttttgtgctttttggtttcagCAAACACATCAGAAAAATCAGTTGAAAGACACAATTGATGTTGAAGAACCAGAAG

upper sequence: GLYMA17G02640.1 (Glycine max), 3'ss of exon 18
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 18
---------gtaggtaacctaaacttactgattaaacaatttcaggtttagcttattca-atgtgataaatgctgctgctaatatgctgttttaaaaaaatca--gCAAACACATCAGAAGAATCAGGTGAAAGATTCCATAGATGTTGATGAACCAGAAG
          |   |  ||    ||| ||| ||     ||        ||  || |    |     ||     |  || |  |||  | ||||  |||  |||  |||||||||||| ||||||||| | ||||| ||||||||||| |||||||| ||||
gtgtgtaatctttcttgccatgtcttgctgctttggtgatccataacctactttgtatgcacactttattcatttttgtttctatttttttttttaaatttcacagCAAACACATCAAAAGAATCAGTTAAAAGACTCCATAGATGTGGATGAACCTGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagcttattcaatgtgataaatgctgctgctaatatgctgttttaaaaaaatcagCAAACACATCAGAAGAATCAGGTGAAAGATTCCATAGATGTTGATGAACCAGAAG
                           tgctaat  putative branch site (score: 2)
                              taatatgctgttttaa  TA-rich tract