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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgatgatactttgcttttatggataaattatcataaactaggcctgtaattgtggctaattttttcttttgaatcttctctatagGGTGTTTTGAAGATATGCCAGTTGCCTTCTGGCTCAAACTATGACAGCTACTGGCCTGTACAAAAA

Basic information

species Glycine max
transcript GLYMA16G32890.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32890.1 (Glycine max), 3'ss of exon 18
lower sequence: LOC_Os04g18010.1 (Oryza sativa), 3'ss of exon 18
gtacatgatgatactttgctt-ttatggataaattatcataaactaggcctgtaattgtggctaattttttcttttgaatcttctctatagGGTGTTTTGAAGATATGCCAGTTGCCTTCTGGCTCAAACTATGACAGCTACTGGCCTGTACAAAAA
      | |  |  ||||    || | |  | ||  |  ||    | |  ||  |||  ||   |   ||  ||||   |      | |||||| || ||||||||||||| ||||| || |  |  ||||||||||||||||||||||| ||||| 
------gttagttgtttgtgcattgttgtcagatagttttactaaaagtttgagattcagggatacacttcttttttggt------tgtagGGTTTTCTGAAGATATGCCAATTGCCCTCAGCATATAACTATGACAGCTACTGGCCTGTTCAAAAG

upper sequence: GLYMA16G32890.1 (Glycine max), 3'ss of exon 18
lower sequence: GRMZM2G453879_T01 (Zea mays), 3'ss of exon 3
-gtacatgatgatactttgcttttatggataaattat------cataaactaggcctgtaattgtggct---aattttttcttttgaatcttctctatagGGTGTTTTGAAGATATGCCAGTTGCCTTCTGGCTCAAACTATGACAGCTACTGGCCTGTACAAAAA
   | ||| | |     || || |||   || |||        || ||| ||      |  || ||  |   |||||    || |||||  |   |  ||||| || |||||||||| |||||||| ||||  |  |||||||||| |||||||||||| ||||| 
caaatatggttacctggtgtttatatacttatattgcatcctgcaaaaaatattatattgcttttgttttggaatttgaagttatgaattatgggttcagGGTTTTCTGAAGATATGTCAGTTGCCATCTGCATATAACTATGACAACTACTGGCCTGTTCAAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcataaactaggcctgtaattgtggctaattttttcttttgaatcttctctatagGGTGTTTTGAAGATATGCCAGTTGCCTTCTGGCTCAAACTATGACAGCTACTGGCCTGTACAAAAA
                       ggctaat  putative branch site (score: 3)
                             ttttttcttttgaatc  CT-rich tract
                          taattttttcttttga  TA-rich tract