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gtatttcattgtgatgcacaaaattatcttgtgaatgtgagtaaaacagaaaatgatcttgtcatatgcagGTGAATCCGGATTTAGTAGCCTGCCTTGAAAATGCTGGTCTTTCTTTTACTGGAAAGGATGAAACAGGTCAACGCATGGAG
species | Glycine max |
transcript | GLYMA16G19580.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: ATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAG GTGAATCCGGATTTAGTAGCCTGCCTTGAAAATGCTGGTCTTTCTTTTACTEST: gi|58014702|gb|CX701444.1|CX701444
genomic: ATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAGgtatttcatt ... tcatatgcagGTGAATCCGGATTTAGTAGCCTGCCTTGAAAATGCTGGTCTTTCTTTTACT
EST: ATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAG GTGAATCCGGATTTAGTAGCCTGCCTTGAAAATGCTGGTCTTTCTTTTACTEST: gi|58025067|gb|CX711808.1|CX711808
genomic: ATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAGgtatttcatt ... tcatatgcagGTGAATCCGGATTTAGTAGCCTGCCTTGAAAATGCTGGTCTTTCTTTTACT
EST: ATCGGCATAGATATGAG GTGATTCCGGATTTAGTAGCCTGCCTTGAAAATGCTGGTCTTTCTTTTACTEST: gi|192302191|gb|FG996613.1|FG996613
genomic: ATCGGCATAGATATGAGgtatttcatt ... tcatatgcagGTGAATCCGGATTTAGTAGCCTGCCTTGAAAATGCTGGTCTTTCTTTTACT
EST: ATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAG GTGAATCCGGATTTAGTAGCCTGCCTTGAAAATGCTGGTCTTTCTTTTACTEST: gi|207683288|gb|GD666513.1|GD666513
genomic: ATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAGgtatttcatt ... tcatatgcagGTGAATCCGGATTTAGTAGCCTGCCTTGAAAATGCTGGTCTTTCTTTTACT
EST: ATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGACATAGATATGAG GTGAATCCGGATTTAGTAGTCTGCCTTGAAAATGCTGGTCTTTCTTTTACTEST: gi|22523089|gb|BU081900.1|BU081900
genomic: ATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAGgtatttcatt ... tcatatgcagGTGAATCCGGATTTAGTAGCCTGCCTTGAAAATGCTGGTCTTTCTTTTACT
EST: ATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAG GTGAATCCGGATTTAGTAGCCTGCCTTGAAAATGCTGGTCTTTCTTTTACT
genomic: ATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAGgtatttcatt ... tcatatgcagGTGAATCCGGATTTAGTAGCCTGCCTTGAAAATGCTGGTCTTTCTTTTACT
cacaaaattatcttgtgaatgtgagtaaaacagaaaatgatcttgtcatatgcagGTGAATCCGGATTTAGTAGCCTGCCTTGAAAATGCTGGTCTTTCTTTTACTGGAAAGGATGAAACAGGTCAACGCATGGAG
tcttgtc CT-rich tract
aattatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttcattgtgatgcacaaaattatcttgtgaatgtgagtaaaacagaaaatgatcttgtcatatgcagGTGAATCCGGATTTAGTAGCCTGCCTTGAAAATGCTGGTCTTTCTTTTACTGGAAAGGATGAAACAGGTCAACGCATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA