1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...ggtagaattttattttattatgcacaataatgagaggaaaaaaatagatattgattcttaggttatctgaatgttattttcttttattgaatctgtctagGTATAATTTACCGTGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATGGTCATGTTGTATTAGCTGATTTTGATCTATCATATATGACATCTTGTAA
species | Glycine max |
transcript | GLYMA16G19560.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: ATTCTATGCGGCAGAGGTTGTCATTGGTTTGGAATATCTCCACTGTTTAG GTATAATTTACCGTGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATGEST: gi|120530273|gb|EH258407.1|EH258407
genomic: ATTCTATGCGGCAGAGGTTGTCATTGGTTTGGAATATCTCCACTGTTTAGgtacgctgct ... atctgtctagGTATAATTTACCGTGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATG
EST: ATTCTATGCGGCAGAGGTTGTCATTGGTTTGGAATATCTCCACTGTTTAG GTATAATTTACCGTGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATGEST: gi|6482465|gb|AW201722.1|AW201722
genomic: ATTCTATGCGGCAGAGGTTGTCATTGGTTTGGAATATCTCCACTGTTTAGgtacgctgct ... atctgtctagGTATAATTTACCGTGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATG
EST: CTCCACTGTTTAG GTATAATTTACCGTGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATGEST: gi|23728010|gb|BU762049.1|BU762049
genomic: CTCCACTGTTTAGgtacgctgct ... atctgtctagGTATAATTTACCGTGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATG
EST: ATTCTATGCGGCAGAGGTTGTCATTGGTTTGGAATATCTCCACTGTTTAG GTATAATTTACCGTGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATG
genomic: ATTCTATGCGGCAGAGGTTGTCATTGGTTTGGAATATCTCCACTGTTTAGgtacgctgct ... atctgtctagGTATAATTTACCGTGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATG
agatattgattcttaggttatctgaatgttattttcttttattgaatctgtctagGTATAATTTACCGTGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATGGTCATGTTGTATTAGCTGATTTTGATCTATCATATATGACATCTTGTAA
tattgat putative branch site (score: 3)
tctgtct putative PPT
aatgttattttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtagaattttattttattatgcacaataatgagaggaaaaaaatagatattgattcttaggttatctgaatgttattttcttttattgaatctgtctagGTATAATTTACCGTGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATGGTCATGTTGTATTAGCTGATTTTGATCTATCATATATGACATCTTGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - tatgcac
- - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaatg