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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaattctgatccagaacatgtgttttccttgattgctacttacctaatatgcttcctcttgttcctgttgcttattgagtttaaaatttgtcatatgtattgatacacacttgtgatcaatttcagATCGGATAGAGAACTTATAGGTCCCAACAATCAATATCTTTCCAAAATTGTTGCAGTTTTTGCCGAG

Basic information

species Glycine max
transcript GLYMA16G04400.2
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G04400.1 (Glycine max), 3'ss of exon 18
lower sequence: Vv08s0007g07240.t01 (Vitis vinifera), 3'ss of exon 18
gtagaattctgatccagaacatgtgttttccttgattgctacttacctaatatgcttcctcttgttcctgttgcttattgagtttaaaatttgtcatatgtattgatacacacttgtgatcaatttcagATCGGATAGAGAACTTATAGGTCCCAACAATCAATATCTTTCCAAAATTGTTGCAGTTTTTGCCGAG
                     |      |||   | || ||| ||   ||| || |      ||  || | |  || ||     |    ||| |    |  |||  |    |||  |  | | || ||| || ||||| |||||| | || |||||||||||||||||| ||||||| |||||||| ||||| |||
--------------------gtagaaactcca-aactgttacatagggaatgtgttgt---gtgcaccagatcttttttactcct---ctttattggtttgattattttttactcctctttatttacagGTCAGATAGGGAACTTTTGGGGCCCAACAATCAATATCTTCCCAAAATAGTTGCAGTCTTTGCTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209708942|gb|BW653483.1|BW653483
EST:     GTTGTGCATGACCAACTTTGTTCAATGGTTGAAAG                         ATCGGATAGAGAACTTATAGGTCCCAACAATCAATATCTTTCCAAAATTGT
genomic: GTTGTGCATGACCAACTTTGTTCAATGGTTGAAAGgtagaattct ... tcaatttcagATCGGATAGAGAACTTATAGGTCCCAACAATCAATATCTTTCCAAAATTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattgagtttaaaatttgtcatatgtattgatacacacttgtgatcaatttcagATCGGATAGAGAACTTATAGGTCCCAACAATCAATATCTTTCCAAAATTGTTGCAGTTTTTGCCGAG
                          tattgat  putative branch site (score: 3)
        tttaaaatttgtcata  TA-rich tract