1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtagtatatagtgatatttgtgtttcctgatttactctgttaatgttgtaaaaaatatatttgataatctatataaaatgtagGTTTCCCCAGAAGATGTGCTTATCACTCCAGTGCAGTGCAAAGCTTTGTGGAGACAATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAG
species | Glycine max |
transcript | GLYMA15G13380.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TAACTAGGGAAGCTTCTGTAGATCCATTGGCTTCAAGCACAT--G-GGAG G-------AGAAGATGTGCTTATCACTCCAGTGCAGTGCAAAGCTTTGT-GEST: gi|21889070|gb|BQ742283.1|BQ742283
genomic: TAACTAGGGAAGCTTCTGTAGATCCATTGGCTTCAAGCACATGGGAGGAGgtagtatata ... taaaatgtagGTTTCCCCAGAAGATGTGCTTATCACTCCAGTGCAGTGCAAAGCTTTGTGG
EST: TAACTAGGGAAGCTTCTGTAGATCCATTGGCTTCAAGCACATGGGAGGAG GTTTCCCCAGAAGATGTGCTTATCACTCCAGTGCAGTGCAAAGCTTTGTGGEST: gi|19271184|gb|BM887440.1|BM887440
genomic: TAACTAGGGAAGCTTCTGTAGATCCATTGGCTTCAAGCACATGGGAGGAGgtagtatata ... taaaatgtagGTTTCCCCAGAAGATGTGCTTATCACTCCAGTGCAGTGCAAAGCTTTGTGG
EST: TAACTAGGGAAGCTTCTGTAGATCCATTGGCTTCAAGCACATGGGAGGAG GTTTCCCCAGAAGATGTGCTTATCACTCCAGTGCAGTGCAAAGCTTTGTGGEST: gi|298194599|gb|HO043071.1|HO043071
genomic: TAACTAGGGAAGCTTCTGTAGATCCATTGGCTTCAAGCACATGGGAGGAGgtagtatata ... taaaatgtagGTTTCCCCAGAAGATGTGCTTATCACTCCAGTGCAGTGCAAAGCTTTGTGG
EST: TAACTAGGGAAGCTTCTGTAGATCCATTGGCTTCAAGCACATGGGAGGAG GTTTCCCCAGAAGATGTGCTTATCACTCCAGCGCAGTGCGAGGCTTTGTGGEST: gi|6134477|gb|AW132870.1|AW132870
genomic: TAACTAGGGAAGCTTCTGTAGATCCATTGGCTTCAAGCACATGGGAGGAGgtagtatata ... taaaatgtagGTTTCCCCAGAAGATGTGCTTATCACTCCAGTGCAGTGCAAAGCTTTGTGG
EST: TAACTAGGGAAGCTTCTGTAGATCCATTGGCTTCAAGCACATGGGAGGAG GTTTCCCCAGAAGACGTGCTTATCACTCCAGTGCAGTGCAAGGCTTTGTGG
genomic: TAACTAGGGAAGCTTCTGTAGATCCATTGGCTTCAAGCACATGGGAGGAGgtagtatata ... taaaatgtagGTTTCCCCAGAAGATGTGCTTATCACTCCAGTGCAGTGCAAAGCTTTGTGG
gatttactctgttaatgttgtaaaaaatatatttgataatctatataaaatgtagGTTTCCCCAGAAGATGTGCTTATCACTCCAGTGCAGTGCAAAGCTTTGTGGAGACAATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAG
ttaatgttgtaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtatatagtgatatttgtgtttcctgatttactctgttaatgttgtaaaaaatatatttgataatctatataaaatgtagGTTTCCCCAGAAGATGTGCTTATCACTCCAGTGCAGTGCAAAGCTTTGTGGAGACAATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT