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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtctgctttatttatatggatcatgctttctcaatgagaactgtcatgaatacttaaactgatagacatcactctaatttcttcaattataatattgttgtgtatacttgatagccaattgttggtattcaatgtctttgatgcattttacagGTTCTTCCTGTTTTCTTGAGAGTTCTTCCATTAAAAGAAGACCACGAGGAGTCTATGGCTGTCTATAGTTGTGTCTTCTCTCTTGTATTCTCATCCAATC

Basic information

species Glycine max
transcript GLYMA15G05090.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05090.1 (Glycine max), 3'ss of exon 18
lower sequence: Vv12s0034g02160.t01 (Vitis vinifera), 3'ss of exon 18
gtaatgtctgctttatttatatggatcatgctttctcaatgagaactgtcatgaatacttaaactgatagacatcactctaatttcttcaattataatattgttgtgtatacttgatagccaattgttggtattcaatgtctttgatgcattttacagGTTCTTCCTGTTTTCTTGAGAGTTCTTCCATTAAAAGAAGACCACGAGGAGTCTATGGCTGTCTATAGTTGTGTCTTCTCTCTTGTATTCTCATCCAATC
                                               || ||   | ||      |        | || ||   || | |||  | ||  | ||||   | |||    ||   ||  |     || || |||| | |   |||  ||||| |||||||||||||||| |||||||||  | |||||||| |  |||||||| || ||||||| ||  ||||| |    ||||||  |  |||| ||||
-----------------------------------------------gttattttt-ctgttttcgtcttgtgactctttatcatccttaatccttatgat-ttgtcatttcttttgggct--tttcta----tctatttcttagttatttttctcagGTCCTTCCTGTTTTCTTGAAAGTTCTTCCTCTGAAAGAAGATCGTGAGGAGTCCATTGCTGTCTTTACCTGTGTATGTAATCTTGTTGTGGCATCTAATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18039701|gb|BM307995.1|BM307995
EST:     CCGTGGCAAGGATGATCATGGTACACCCTGAATCTATCCCATTAAACCAG                         GTTCTTCCTGTTTTCTTGAGAGTTCTTCCATTAAAAGAAGACCACGAGGAG
genomic: CCGTGGCAAGGATGATCATGGTACACCCTGAATCTATCCCATTAAACCAGgtaatgtctg ... cattttacagGTTCTTCCTGTTTTCTTGAGAGTTCTTCCATTAAAAGAAGACCACGAGGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgtatacttgatagccaattgttggtattcaatgtctttgatgcattttacagGTTCTTCCTGTTTTCTTGAGAGTTCTTCCATTAAAAGAAGACCACGAGGAGTCTATGGCTGTCTATAGTTGTGTCTTCTCTCTTGTATTCTCATCCAATC
                                     ctttgat  putative branch site (score: 5)
                           tattcaat  TA-rich tract