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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattattaataaaaacagttcactttaacattttcttaacatgactaagaaatggccgtactaatctgtctctgtttataatggttttagGACTCCAAAGCCCAGGTAACTGCAATACATTTAATTATTGGGTCTCTTCAGAGAATGAACATCTTTGGCGTCGAGAACAGGGATACATTAACACACAAGG

Basic information

species Glycine max
transcript GLYMA14G40270.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G40270.1 (Glycine max), 3'ss of exon 18
lower sequence: Vv18s0001g14680.t01 (Vitis vinifera), 3'ss of exon 18
gtaattattaataaaaacagttcactttaacattttcttaacatgactaagaaatggccgtactaatctgtctctgtttataatggttttagGACTCCAAAGCCCAGGTAACTGCAATACATTTAATTATTGGGTCTCTTCAGAGAATGAACATCTTTGGCGTCGAGAACAGGGATACATTAACACACAAGG
       | || |   |  | ||  |  || | |  | |       | ||  | |     |   |       | |||   |     | |||||| |||||||| || || |||||||| ||| |||| |||||| |||| ||||| |||||  | ||||| || ||||| |||||||||||||| ||||| |
------gtaaacattcattgatcgatcaaaaagtggcatgcatcacccaattatttattttctcagatgaattttgtgcctggc--tattagGATTCCAAAGCTCAAGTGACTGCAATTCATCTAATAATTGGGACTCTGCAGAGGATGAATGTTTTTGGTGTTGAGAATAGGGATACATTAACGCACAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335912|gb|CO979778.1|CO979778
EST:     CTTATGAATTTTTCACTCAGGCATTTGTATTATATGAAGAAGAAATTGCG                         GACTCCAAAGCCCAGGTAACTGCAATACATTTAATTATTGGGTCTCTTCAG
genomic: CTTATGAATTTTTCACTCAGGCATTTGTATTATATGAAGAAGAAATTGCGgtaattatta ... atggttttagGACTCCAAAGCCCAGGTAACTGCAATACATTTAATTATTGGGTCTCTTCAG
EST: gi|14011807|gb|BG726729.1|BG726729
EST:     CTTATGAATTTTTCACTCAGGCATTTGTATTATATGAAGAAGAAATTGCG                         GACTCCAAAGCCCAGGTAACTGCAATACATTTAATTATTGGGTCTCTTCAG
genomic: CTTATGAATTTTTCACTCAGGCATTTGTATTATATGAAGAAGAAATTGCGgtaattatta ... atggttttagGACTCCAAAGCCCAGGTAACTGCAATACATTTAATTATTGGGTCTCTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaacatgactaagaaatggccgtactaatctgtctctgtttataatggttttagGACTCCAAAGCCCAGGTAACTGCAATACATTTAATTATTGGGTCTCTTCAGAGAATGAACATCTTTGGCGTCGAGAACAGGGATACATTAACACACAAGG
                       tactaat  putative branch site (score: 1)
                                       tttataatggtttta  TA-rich tract