1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtatgattcattgtcttcattccctgtaaatatttggtaccataacttccagttcatagctcaactatttattgtcattgagaacaacatatcataatgtttataatttatattaagctgtaggatcataggacagtgatctagatgaatctattatttgggatacaatgatgacttttttaataataaaaattccagGCATCACTGGAATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATGACAGAACAG
species | Glycine max |
transcript | GLYMA13G43330.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: CTGCACTTCGTCAGAAGGAGGGTGAACTTGCTTCATACATGTCACGCCTG GCATCACTGGAATCTATTCGCGATTCTCTTGCTGATEST: gi|10237924|gb|BE806812.1|BE806812
genomic: CTGCACTTCGTCAGAAGGAGGGTGAACTTGCTTCATACATGTCACGCCTGgtatgattca ... aaaattccagGCATCACTGGAATCTATTCGCGATTCTCTTGCTGAT
EST: CTGCACTTCGTCAGAAGGAGGGTGAACTTGCTTCATACATGTCACGCCTG GCATCACTGGAATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATGEST: gi|13181578|gb|BG352918.1|BG352918
genomic: CTGCACTTCGTCAGAAGGAGGGTGAACTTGCTTCATACATGTCACGCCTGgtatgattca ... aaaattccagGCATCACTGGAATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATG
EST: CTGCACTTCGTCAGAAGGAGGGTGAACTTGCTTCATACATGTCACGCTTG GCATCACTGGAATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATGEST: gi|17022611|gb|BM093645.1|BM093645
genomic: CTGCACTTCGTCAGAAGGAGGGTGAACTTGCTTCATACATGTCACGCCTGgtatgattca ... aaaattccagGCATCACTGGAATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATG
EST: CTGCACTTCGTCAGAAGGAGGGTGAACTTGCTTCATACATGTCACGCCTG GCATCACTGGAATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATG
genomic: CTGCACTTCGTCAGAAGGAGGGTGAACTTGCTTCATACATGTCACGCCTGgtatgattca ... aaaattccagGCATCACTGGAATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATG
gatgaatctattatttgggatacaatgatgacttttttaataataaaaattccagGCATCACTGGAATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATGACAGAACAG
ttttaat putative branch site (score: 3)
atacaatgatgacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgattcattgtcttcattccctgtaaatatttggtaccataacttccagttcatagctcaactatttattgtcattgagaacaacatatcataatgtttataatttatattaagctgtaggatcataggacagtgatctagatgaatctattatttgggatacaatgatgacttttttaataataaaaattccagGCATCACTGGAATCTATTCGCGATTCTCTTGCTGATGAGTTGGTCAAAATGACAGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT