1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...attagtttgtaacagactgaattactgactacccgattattttattgttctatttcatttgataatggttgagtattatgtttttattttgttcatccagTGACTTTGGATCCATCTTTTCTATGCTACTACCGGGAACAATGGCCAAGTTAGAACCTCCAGAAGGATGCAGCTTCCTTGATGGTCTTGAGGTTCGTGTT
species | Glycine max |
transcript | GLYMA12G36520.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: GATGAGAAGAAGAAGGAGACACTAAATGTTACNTGGATCAAAGTGAATAA TGACTTTGGATCCATCTTTTATATGCTACTACCGGGAACAATGGCCAAGTTEST: gi|58016495|gb|CX703237.1|CX703237
genomic: GATGAGAAGAAGAAGGAGACACTAAATGTTACCTGGATCAAAGTGAATAAgtgagttatt ... gttcatccagTGACTTTGGATCCATCTTTTCTATGCTACTACCGGGAACAATGGCCAAGTT
EST: GATGAGAAGAAGAAGGAGACACTAAATGTTACCTGGATCAAAGTGAATAA TGACTTTGGATCCATCTTTTATATGCTACTACCGGGAACAATGGCCAAGTTEST: gi|208208138|gb|GE003397.1|GE003397
genomic: GATGAGAAGAAGAAGGAGACACTAAATGTTACCTGGATCAAAGTGAATAAgtgagttatt ... gttcatccagTGACTTTGGATCCATCTTTTCTATGCTACTACCGGGAACAATGGCCAAGTT
EST: GATGAGAAGAAGAAGGAGACACTTAATGTTACCTGGATCAAAGTGAATAA TGACTTTGGATCCATCTTTTCTACGCTACTACCGGGAACAATGGCCAAGTT
genomic: GATGAGAAGAAGAAGGAGACACTAAATGTTACCTGGATCAAAGTGAATAAgtgagttatt ... gttcatccagTGACTTTGGATCCATCTTTTCTATGCTACTACCGGGAACAATGGCCAAGTT
tgttctatttcatttgataatggttgagtattatgtttttattttgttcatccagTGACTTTGGATCCATCTTTTCTATGCTACTACCGGGAACAATGGCCAAGTTAGAACCTCCAGAAGGATGCAGCTTCCTTGATGGTCTTGAGGTTCGTGTT
atttgat putative branch site (score: 5)
tttttattttgttc putative PPT
tattatgtttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attagtttgtaacagactgaattactgactacccgattattttattgttctatttcatttgataatggttgagtattatgtttttattttgttcatccagTGACTTTGGATCCATCTTTTCTATGCTACTACCGGGAACAATGGCCAAGTTAGAACCTCCAGAAGGATGCAGCTTCCTTGATGGTCTTGAGGTTCGTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - gactgaa
- - - - - - - - - - - - - - ctacccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttgag