1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...aattttgttgggttgggtggtagggtgttaaaattgtttcatcttcttgtttgtattaatttaacaatctgattttatttttcaacctcccgcattccagAATATCGACTTATGGGGATTGTGAGCCACAGTGGAACTTCTACGCAGTGTGGCCACTATGTTGCTCACATTTTAAAAGATGGTAGATGGGCAATTTTCAA
species | Glycine max |
transcript | GLYMA12G22240.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: AACCTCTGCATCCACTACCAATGATGTTAACCTACCCGATGGAGGAGGGA AATATCGACTTATGGGGATTGTGAGCCACAGTGGAACTTCTACGCAGTGTGEST: gi|209716125|gb|BW662323.1|BW662323
genomic: AACCTCTGCATCCACTACCAATGATGTTAACCTACCCGATGGAGGAGGGAgtaagttgct ... cgcattccagAATATCGACTTATGGGGATTGTGAGCCACAGTGGAACTTCTACGCAGTGTG
EST: CCTACCCGATGGAGGAGGGA AATATCGGCTTATGGGGATTGTGAGCCACAGTGGAACTTCTACGCAGTGTGEST: gi|58019186|gb|CX705928.1|CX705928
genomic: CCTACCCGATGGAGGAGGGAgtaagttgct ... cgcattccagAATATCGACTTATGGGGATTGTGAGCCACAGTGGAACTTCTACGCAGTGTG
EST: AACCTCTGCATCCACTACCAATGATGTTAACCTACCCGATGGAGGAGGGA AATATCGACTTATGGGGATTGTGAGCCACAGTGGAACTTCTACGCAGTGTGEST: gi|192308080|gb|FK000408.1|FK000408
genomic: AACCTCTGCATCCACTACCAATGATGTTAACCTACCCGATGGAGGAGGGAgtaagttgct ... cgcattccagAATATCGACTTATGGGGATTGTGAGCCACAGTGGAACTTCTACGCAGTGTG
EST: CCCGATGGAGGAGGGA AATATCGACTTATGGGGATTGTGAGCCACAGTGGAACTTCTACGCAGTGTGEST: gi|38193584|gb|CF922790.1|CF922790
genomic: CCCGATGGAGGAGGGAgtaagttgct ... cgcattccagAATATCGACTTATGGGGATTGTGAGCCACAGTGGAACTTCTACGCAGTGTG
EST: AACCTCTGCATCCACTACCAATGATGTTAACCTACCCGATGGAGGAGGGA AATATCGACTTATGGGGATTGTGAGCCACAGTGGAACTTCTACGCAGTGTGEST: gi|58018934|gb|CX705676.1|CX705676
genomic: AACCTCTGCATCCACTACCAATGATGTTAACCTACCCGATGGAGGAGGGAgtaagttgct ... cgcattccagAATATCGACTTATGGGGATTGTGAGCCACAGTGGAACTTCTACGCAGTGTG
EST: AACCTCTGCATCCACTACCAATGATGTTAACCTACCCGATGGAGGAGGGA AATATCGACTTATGGGGATTGTGAGCCACAGTGGAACTTCTACGCAGTGTGEST: gi|192308079|gb|FK000407.1|FK000407
genomic: AACCTCTGCATCCACTACCAATGATGTTAACCTACCCGATGGAGGAGGGAgtaagttgct ... cgcattccagAATATCGACTTATGGGGATTGTGAGCCACAGTGGAACTTCTACGCAGTGTG
EST: CCCGATGGAGGAGGGA AATATCGACTTATGGGGATTGTGAGCCACAGTGGAACTTCTACGCAGTGTG
genomic: CCCGATGGAGGAGGGAgtaagttgct ... cgcattccagAATATCGACTTATGGGGATTGTGAGCCACAGTGGAACTTCTACGCAGTGTG
cttgtttgtattaatttaacaatctgattttatttttcaacctcccgcattccagAATATCGACTTATGGGGATTGTGAGCCACAGTGGAACTTCTACGCAGTGTGGCCACTATGTTGCTCACATTTTAAAAGATGGTAGATGGGCAATTTTCAA
tttttcaacctccc CT-rich tract
ttgtattaatttaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattttgttgggttgggtggtagggtgttaaaattgtttcatcttcttgtttgtattaatttaacaatctgattttatttttcaacctcccgcattccagAATATCGACTTATGGGGATTGTGAGCCACAGTGGAACTTCTACGCAGTGTGGCCACTATGTTGCTCACATTTTAAAAGATGGTAGATGGGCAATTTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - -gggttgg
- - - - - - - - - - - gggtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacctc