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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgattccaactactcaaatgacacaatctatcgtaaatttgttttatattcttactatatgattatgatgtatttcagGCTTTAGTTGAGTTCTTTGGAACCCTTTCTCGAGAATGGGCACTCGAGTGTATGAAAGATCTTTTACTTGTCAATCTTAGGGGCAATCTTCAAATAATTG

Basic information

species Glycine max
transcript GLYMA11G06720.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 18
lower sequence: GRMZM2G057576_T02 (Zea mays), 3'ss of exon 16
gttttgattccaactactcaaatgacacaatctatcgtaaatttgttttatattcttactatatgattatgatgtatttcagGCTTTAGTTGAGTTCTTTGGAACCCTTTCTCGAGAATGGGCACTCGAGTGTATGAAAGATCTTTTACTTGTCAATCTTAGGGGCAATCTTCAAATAATTG
       ||     |  |||  |   |   ||| |   |  | | | || | |||||  |   | |  |     |    |||||  | |||||||||||||| ||||||||  | || |||||||| ||||| ||||| || ||| |||| || ||||| ||||| |||||||| ||  |||
------gtttgtggtgttcagtt---atgttct-tgaaatgtatctgttgttttcttgtttattaacaacttccttgcacagGCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCATGAAGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTG

upper sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 18
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 18
gttttgattccaactactcaaatgacacaatctatcgtaaatttgttttatattcttactatatgattatgatgtatttcagGCTTTAGTTGAGTTCTTTGGAACCCTTTCTCGAGAATGGGCACTCGAGTGTATGAAAGATCTTTTACTTGTCAATCTTAGGGGCAATCTTCAAATAATTG
|||       |||    | | || ||    |||||   ||  | || || | |||| |||||      ||| | ||||||||||| | ||||||||||||||||| |||||  |||||||||| || |||||||||||||| ||| |||||||||||||| | | ||||||||| |||||||
gttagatgctcaaagtgttacataacttgttctatttgaatgtagtatttttttctaactat------atggtatatttcagGCTCTTGTTGAGTTCTTTGGAACTCTTTCAAGAGAATGGGCTCTTGAGTGTATGAAAGACCTTCTACTTGTCAATCTTCGTGCCAATCTTCAGATAATTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatctatcgtaaatttgttttatattcttactatatgattatgatgtatttcagGCTTTAGTTGAGTTCTTTGGAACCCTTTCTCGAGAATGGGCACTCGAGTGTATGAAAGATCTTTTACTTGTCAATCTTAGGGGCAATCTTCAAATAATTG
                         ttcttac  putative branch site (score: 2)
          taaatttgttttatat  TA-rich tract