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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaaatgttcagcatttatatttttcatccttcaattttttttcttttcctcccatccattttttgtttataatcttcagcctggatatttgcagATTATGTTCCACATAGATGAAGCAAAGCAAAGGTCCCCCTGAACTGGGACAAATAATATTTTATCATACTCATGTTTAGTGCTAGGAGTTTCAAATCCAG

Basic information

species Glycine max
transcript GLYMA10G41940.1
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294129|gb|FG986218.1|FG986218
EST:     GTTTGCCTGTCCTTGGTGGCATGCTTATGACATTTTACGTTGGAACAAAG                         ATTATGTTCCACATAGATGAAGCAAAGCAA-GGTCCCCCTGAACTGGGACA
genomic: GTTTGCCTGTCCTTGGTGGCATGCTTATGACATTTTACGTTGGAACAAAGgtttgaaatg ... atatttgcagATTATGTTCCACATAGATGAAGCAAAGCAAAGGTCCCCCTGAACTGGGACA
EST: gi|213600328|gb|DB979823.1|DB979823
EST:     GTTTGCCTGTCCTTGGTGGCATGCTTATGACATTTTACGTTGGAACAAAG                         ATTATGTTCCACATAGATGAAGCAAAGCAAAGGTCCCCCTGAACTGGGACA
genomic: GTTTGCCTGTCCTTGGTGGCATGCTTATGACATTTTACGTTGGAACAAAGgtttgaaatg ... atatttgcagATTATGTTCCACATAGATGAAGCAAAGCAAAGGTCCCCCTGAACTGGGACA
EST: gi|18848511|gb|BM567704.1|BM567704
EST:     GTTTGCCTGTCCTTGGTGGCATGCTTATGACATTTTACGTTGGAACAAAG                         ATTATGTTCCACATAGATGAAGCAAAGCAAAGGTCCCCCTGAACTGGGACA
genomic: GTTTGCCTGTCCTTGGTGGCATGCTTATGACATTTTACGTTGGAACAAAGgtttgaaatg ... atatttgcagATTATGTTCCACATAGATGAAGCAAAGCAAAGGTCCCCCTGAACTGGGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttttcctcccatccattttttgtttataatcttcagcctggatatttgcagATTATGTTCCACATAGATGAAGCAAAGCAAAGGTCCCCCTGAACTGGGACAAATAATATTTTATCATACTCATGTTTAGTGCTAGGAGTTTCAAATCCAG
                  attttttgtttataat  TA-rich tract