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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaggatcactttctctcatcatacacttgttttcttattatgtcaattctgagaagttatatctgtgtagGCATGTGCTTCCTTAGAACCAAACTACCAGCCTCCAGTAACTTTCATAGTTGTGCAAAAAAGACATCATACCCGGTTATTTGCAAACAACTACAGGGACA

Basic information

species Glycine max
transcript GLYMA10G38770.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38770.1 (Glycine max), 3'ss of exon 18
lower sequence: GRMZM2G079080_T02 (Zea mays), 3'ss of exon 17
gtcaggatcactttc-tctcatcatacacttgttttcttattatgtcaattctgagaagttatatctgtgtagGCATGTGCTTCCTTAGAACCAAACTACCAGCCTCCAGTAACTTTCATAGTTGTGCAAAAAAGACATCATACCCGGTTATTTGCAAACAACTACAGGGACA
||  ||  || |||  | |  |  ||  ||| |   ||  ||||     | || |  ||   | | | |  |||||||||| ||| |||||||||| ||||||||||| ||||| ||  | || || |||||| | ||||||||  |  |||||||||| ||  |||  ||||
gttgggtgcattttaatgtttttttattcttctaagctccttatagtt-tactaactagc-gtttttttccagGCATGTGCATCCCTAGAACCAAATTACCAGCCTCCTGTAACATTTGTGGTGGTTCAAAAACGTCATCATACAAGACTATTTGCAAATAATCACAAAGACA

upper sequence: GLYMA10G38770.1 (Glycine max), 3'ss of exon 18
lower sequence: Vv05s0020g04190.t01 (Vitis vinifera), 3'ss of exon 15
--------------------gtcaggatcact-ttctctcatcata---cacttgttttcttattatgtc-----aattctgagaagttatatctgtgtagGCATGTGCTTCCTTAGAACCAAACTACCAGCCTCCAGTAACTTTCATAGTTGTGCAAAAAAGACATCATACCCGGTTATTTGCAAACAACTACAGGGACA
                     | |   |  |  |||| | || | |   || |||    |  ||     |       | || | || | || |||    |||| ||||||||  ||||||||||||| || || ||||| ||||| || || || |||||| ||||||||||||| || || || |||||| |||||||| 
gtgagtttcagctttttattcttattttttccattctttaattaaaaatcatttgaaaccaaatagcaacccataggtccttataaataatttctacacagGCTTGTGCTTCTCTAGAACCAAACTATCAACCACCAGTTACTTTTATTGTGGTTCAAAAACGACATCATACCCGATTGTTCGCTAACAACCACAGGGACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19937592|gb|BQ081352.1|BQ081352
EST:     AAGGACAATTTTACCAAGTTTTACTTTATGAGTTAGATGCAATTCGGAAG                         GCATGTGCTTCCTTAGAACCAAACTACCAGCCTCCAGTAACTTTCATAGTT
genomic: AAGGACAATTTTACCAAGTTTTACTTTATGAGTTAGATGCAATTCGGAAGgtcaggatca ... atctgtgtagGCATGTGCTTCCTTAGAACCAAACTACCAGCCTCCAGTAACTTTCATAGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatcatacacttgttttcttattatgtcaattctgagaagttatatctgtgtagGCATGTGCTTCCTTAGAACCAAACTACCAGCCTCCAGTAACTTTCATAGTTGTGCAAAAAAGACATCATACCCGGTTATTTGCAAACAACTACAGGGACA
           ttgttttcttattat  TA-rich tract