1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtaagttattacagacactttctttcaatctttttgatcctctcctgagtatttttgaagtgtggaaagtattcatctacagGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT
species | Glycine max |
transcript | GLYMA10G38590.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: AGAATACCTACTAGATATTTAGTCTAAGAGCAAGCCTGGTGATCAGTATG GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTEST: gi|4260048|gb|AI416544.1|AI416544
genomic: AGAATACCTACGAGATATTTTGTCTAAGAGCAAGCCTGGTGATCAGTATGgtaagttatt ... tcatctacagGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT
EST: AGAGCAAGCCTGGTGATCAGTATG GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTEST: gi|57574855|gb|CX547830.1|CX547830
genomic: AGAGCAAGCCTGGTGATCAGTATGgtaagttatt ... tcatctacagGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT
EST: AGAATACCTACGAGATATTTTGTCTAAGAGCAAGCCTGGTGATCAGTATG GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTEST: gi|58020248|gb|CX706990.1|CX706990
genomic: AGAATACCTACGAGATATTTTGTCTAAGAGCAAGCCTGGTGATCAGTATGgtaagttatt ... tcatctacagGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT
EST: AGAATACCTACGAGATATTTTGTCTAAGAGCAAGCCTGGTGATCAGTATG GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTEST: gi|192333011|gb|FK024660.1|FK024660
genomic: AGAATACCTACGAGATATTTTGTCTAAGAGCAAGCCTGGTGATCAGTATGgtaagttatt ... tcatctacagGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT
EST: AGAATACCTCCGAGATATTTTGTCTAAGAGCAAGCCTGGTGATCAGTATG GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTEST: gi|120494776|gb|EH222943.1|EH222943
genomic: AGAATACCTACGAGATATTTTGTCTAAGAGCAAGCCTGGTGATCAGTATGgtaagttatt ... tcatctacagGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT
EST: AGAATACCTACGAGATATTTTGTCTAAGAGCAAGCCTGGTGATCAGTATG GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTEST: gi|58015952|gb|CX702694.1|CX702694
genomic: AGAATACCTACGAGATATTTTGTCTAAGAGCAAGCCTGGTGATCAGTATGgtaagttatt ... tcatctacagGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT
EST: AGAATACCTACGAGATATTTTGTCTAAGACCAAGCCTGGTGATCAGTATG GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTEST: gi|15203242|gb|BI426010.1|BI426010
genomic: AGAATACCTACGAGATATTTTGTCTAAGAGCAAGCCTGGTGATCAGTATGgtaagttatt ... tcatctacagGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT
EST: AGAATACCTACGAGATATTTTGTCTAAGAGCAAGCCTGGTGATCAGTATG GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTEST: gi|120494261|gb|EH222428.1|EH222428
genomic: AGAATACCTACGAGATATTTTGTCTAAGAGCAAGCCTGGTGATCAGTATGgtaagttatt ... tcatctacagGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT
EST: AGAATACCTACGAGATATTTTGTCTAAGAGCAAGCCTGGTGATCAGTATG GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTEST: gi|10231645|gb|BE800533.1|BE800533
genomic: AGAATACCTACGAGATATTTTGTCTAAGAGCAAGCCTGGTGATCAGTATGgtaagttatt ... tcatctacagGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT
EST: CTAAGAGCAAGCCTGGTGATCAGTATG GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT
genomic: CTAAGAGCAAGCCTGGTGATCAGTATGgtaagttatt ... tcatctacagGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT
atctttttgatcctctcctgagtatttttgaagtgtggaaagtattcatctacagGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT
ttttgat putative branch site (score: 4)
ttcatct putative PPT
tatttttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttattacagacactttctttcaatctttttgatcctctcctgagtatttttgaagtgtggaaagtattcatctacagGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG