1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...ataagttgtcattattgataaattataagcaactgttatacatctatttacttattgtagttctgtttcccttcttactaatggtttcctactagaacagCCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATG
species | Glycine max |
transcript | GLYMA10G35210.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TGTGGTTGAAGACACTGATACGGCCAA CCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCGEST: gi|298183650|gb|HO028863.1|HO028863
genomic: TGTGGTTGAAGACACTGATACGGCCAAgtaatttctt ... actagaacagCCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCG
EST: ACTATAAAACGTGCTCTACAGCTTGTGGTTGAAGACACTGATACGGCCAA CCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCGEST: gi|192334521|gb|FK024480.1|FK024480
genomic: ACTATAAAACGTGCTCTACAGCTTGTGGTTGAAGACACTGATACGGCCAAgtaatttctt ... actagaacagCCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCG
EST: ACTATAAAACGTGCTCTACAGCTTGTGGTTGAAGACACTGATACGGCCAA CCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCGEST: gi|120493752|gb|EH221919.1|EH221919
genomic: ACTATAAAACGTGCTCTACAGCTTGTGGTTGAAGACACTGATACGGCCAAgtaatttctt ... actagaacagCCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCG
EST: ACTATAAAACGTGCTCTACAGCTTGTGGTTGAAGACACTGATACGGCCAA CCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCGEST: gi|207736250|gb|GD713529.1|GD713529
genomic: ACTATAAAACGTGCTCTACAGCTTGTGGTTGAAGACACTGATACGGCCAAgtaatttctt ... actagaacagCCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCG
EST: ACTATAAAACGTGCTCTACAGCTTGTGGTTGAAGACACTGATACGGCCAA CCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCGEST: gi|193384975|gb|FK351485.1|FK351485
genomic: ACTATAAAACGTGCTCTACAGCTTGTGGTTGAAGACACTGATACGGCCAAgtaatttctt ... actagaacagCCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCG
EST: ACTATAAAACGTGCTCTACAGCTTGTGGTTGAAGACACTGATACGGCCAA CCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCGEST: gi|208328364|gb|GE132112.1|GE132112
genomic: ACTATAAAACGTGCTCTACAGCTTGTGGTTGAAGACACTGATACGGCCAAgtaatttctt ... actagaacagCCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCG
EST: ACTATAAAACGTGCTCTACAGCTTGTGGTTGAAGACACTGATATGGCCAA CCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCG
genomic: ACTATAAAACGTGCTCTACAGCTTGTGGTTGAAGACACTGATACGGCCAAgtaatttctt ... actagaacagCCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCG
atttacttattgtagttctgtttcccttcttactaatggtttcctactagaacagCCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATG
tactaat putative branch site (score: 1)
tttcctact putative PPT
ttattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataagttgtcattattgataaattataagcaactgttatacatctatttacttattgtagttctgtttcccttcttactaatggtttcctactagaacagCCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATG
- - - - - - - - - - - - - - gcaactg