1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...aaaacatcagaatttccatgttacattttgttggcactttatttggtgcacagtccagatgtacttgactctgccctgattgtcattgttttatgtgcagGGAAGAAATCTGTGAAACTTGAGATTTACACTGAACAGAGAACTAAAGATGGTGTAAGGTCAGCGAAACAGTGTCTTGGGTCCTCTGGTTTGGAGCTAAA
species | Glycine max |
transcript | GLYMA09G34860.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: CAAATGCTTACATTGCTGTGGGGTCATTGGCCAAGACAAAATATTGCAAG GGAAGAAATCTGTGAAACTTEST: gi|208246365|gb|GE048457.1|GE048457
genomic: CAAATGCTTACATTGCTGTGGGGTCATTGGCCAAG-CAAA-TATTGCAAGgtatgcatga ... ttatgtgcagGGAAGAAATCTGTGAAACTT
EST: CACAAATGCTTACATTGCTGTGGGGTCATTGGCCAAGCAAATATTGCAAG GGAAGAAATCTGTGAAACTTGAGATTTACACTGAACAGAEST: gi|193569660|gb|FK523541.1|FK523541
genomic: CACAAATGCTTACATTGCTGTGGGGTCATTGGCCAAGCAAATATTGCAAGgtatgcatga ... ttatgtgcagGGAAGAAATCTGTGAAACTTGAGATTTACACTGAACAGA
EST: CACAAATGCTTACATTGCTGTGGGGTCATTGGCCAAGCAAATATTGCAAG GGAAGAAATCTG
genomic: CACAAATGCTTACATTGCTGTGGGGTCATTGGCCAAGCAAATATTGCAAGgtatgcatga ... ttatgtgcagGGAAGAAATCTG
gtgcacagtccagatgtacttgactctgccctgattgtcattgttttatgtgcagGGAAGAAATCTGTGAAACTTGAGATTTACACTGAACAGAGAACTAAAGATGGTGTAAGGTCAGCGAAACAGTGTCTTGGGTCCTCTGGTTTGGAGCTAAA
ccctgat putative branch site (score: 4)
ttgtttt putative PPT
attgttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaacatcagaatttccatgttacattttgttggcactttatttggtgcacagtccagatgtacttgactctgccctgattgtcattgttttatgtgcagGGAAGAAATCTGTGAAACTTGAGATTTACACTGAACAGAGAACTAAAGATGGTGTAAGGTCAGCGAAACAGTGTCTTGGGTCCTCTGGTTTGGAGCTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - -ccatgtt
- - - - - - - - - - - - - - tgttggc
- - - - - - - - - - - - - - - - - - - - - - - tgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtacttg