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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgataattgaaataatgattggacaccttcattcttttaaggtttctctggttcactcctctccatgactgaaattgttgtgatgctttattttgacagATATCAAGGTTGATATATACAAATTCAGGTAATGCTATTCTGGCATTAGCATCAAATGCCATTCACCTGCTCTGGAAATGGCAGCGAAATGAGCGTAACT

Basic information

species Glycine max
transcript GLYMA08G22910.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22910.2 (Glycine max), 3'ss of exon 19
lower sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 18
ctgataattgaaataatgattggacaccttcattcttttaaggtttctctggttcactcctctccatgactgaaat--tgttgtgat--gctttattttga------cagATATCAAGGTTGATATATACAAATTCAGGTAATGCTATTCTGGCATTAGCATCAAATGCCATTCACCTGCTCTGGAAATGGCAGCGAAATGAGCGTAACT
       |||||||     |||      |  ||| || | |   | |  |  | || |   |||||  |   |||   |||  | ||  | ||  | || |      ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||  | || ||||| |||||||| ||||| ||||| |
-------ttgaaatccatcttgattcattggatttttctca---tcccatattgcatttgcctccaacaagaaaacaatgtcctcatcagtttcttcttaattgctgcagATATCAAGGTTGATCTATACAAATTCCGGTAATGCTATTCTGGCATTAGCATCAAATGCCATTCATTTTCTTTGGAAGTGGCAGCGCAATGATCGTAATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254339430|gb|GR848147.1|GR848147
EST:     AATCTCAATGTAGATCCTTGAAACTACCGGAGAATGTAAGAGTAACCAAG                         ATATCAAGGTTGATATATACAAATTCAGGTAATGCTATTCTGGCATTAGCA
genomic: AATCTCAATGTAGATCCTTGAAACTACCGGAGAATGTAAGAGTAACCAAGgtatgttatt ... attttgacagATATCAAGGTTGATATATACAAATTCAGGTAATGCTATTCTGGCATTAGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctggttcactcctctccatgactgaaattgttgtgatgctttattttgacagATATCAAGGTTGATATATACAAATTCAGGTAATGCTATTCTGGCATTAGCATCAAATGCCATTCACCTGCTCTGGAAATGGCAGCGAAATGAGCGTAACT
                                         ctttatttt  CT-rich tract
                                          tttattttga  TA-rich tract