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...ccaaagtgttattactttggcctgaaaagaaattttagttaagatggctaaattgtattcaaagtgtagaactttaatgtggggttggatacatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTTATCAAGCATCGTATGGGAGATCTGTTCTACCGATTAGT
species | Glycine max |
transcript | GLYMA07G00430.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTTEST: gi|58021805|gb|CX708546.1|CX708546
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtagt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTTEST: gi|58018020|gb|CX704762.1|CX704762
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtagt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTTEST: gi|58020232|gb|CX706974.1|CX706974
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtagt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTTEST: gi|58024542|gb|CX711283.1|CX711283
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtagt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTTEST: gi|8286121|gb|BE023680.1|BE023680
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtagt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTTEST: gi|51345142|gb|CO985875.1|CO985875
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtagt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTTEST: gi|26268746|gb|CA819809.1|CA819809
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtagt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtagt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
ggctaaattgtattcaaagtgtagaactttaatgtggggttggatacatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTTATCAAGCATCGTATGGGAGATCTGTTCTACCGATTAGT
aattgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaaagtgttattactttggcctgaaaagaaattttagttaagatggctaaattgtattcaaagtgtagaactttaatgtggggttggatacatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTTATCAAGCATCGTATGGGAGATCTGTTCTACCGATTAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - ggcctga
- - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgtattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggttgg