1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtacaatcttgtgataaactggttatgaattttttttaaaaaatgaaacttctgctgcacctttctatgtttataattgctgattgcggatgcatctttttattttaatattttgctggtgcttctttcttgcagGTTCAAAATCTGTTGGGTCATTGTTCACAACATCTTGATAAAGGTGAAACTCACCAAGGTCCTGCTGTGCTTGGAATTGCTATGGTAGCTATGGCTGAAG
species | Glycine max |
transcript | GLYMA06G44340.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: GGAAATGTTCTCAAG GTTCAAAATCTGTTGGGTCATTGTTCACAACATCTTGATAAAGGTGAAACTEST: gi|208200466|gb|GD995137.1|GD995137
genomic: GGAAATGTTCTCAAGgtacaatctt ... tttcttgcagGTTCAAAATCTGTTGGGTCATTGTTCACAACATCTTGATAAAGGTGAAACT
EST: CATGTGCCTATGCTGGAACTGGAAATGTTCTCAAG GTTCAAAATCTGTTGGGTCATTGTTCACAACATCTTGATAAAGGTGAAACTEST: gi|193425219|gb|FK389906.1|FK389906
genomic: CATGTGCCTATGCTGGAACTGGAAATGTTCTCAAGgtacaatctt ... tttcttgcagGTTCAAAATCTGTTGGGTCATTGTTCACAACATCTTGATAAAGGTGAAACT
EST: AATGTTCTCAAG GTTTCAAAATCTGTTGGGTCATTGTTCACAACATCTTGATAAAGGTGAAACEST: gi|10847592|gb|BF070244.1|BF070244
genomic: AATGTTCTCAAGgtacaatctt ... tttcttgcagG-TTCAAAATCTGTTGGGTCATTGTTCACAACATCTTGATAAAGGTGAAAC
EST: ACATGACACTCTTATCATGTGCCTATGCTGGAACTGGAAATGTTCTCAAG GTTCAAAATCTGTTGGGTCATTGTTCACAACATCTTGATAAAGGTGAAACTEST: gi|22521874|gb|BU080685.1|BU080685
genomic: ACATGACACTCTTATCATGTGCCTATGCTGGAACTGGAAATGTTCTCAAGgtacaatctt ... tttcttgcagGTTCAAAATCTGTTGGGTCATTGTTCACAACATCTTGATAAAGGTGAAACT
EST: ACATGACACTCTTATCATGTGCCTATGCTGGAACTGGAAATGTTCTCAAG GTTCAAAATCTGTTGGGTCATTGTTCACAACATCTTGATAAAGGTGAAACTEST: gi|193437445|gb|FK401730.1|FK401730
genomic: ACATGACACTCTTATCATGTGCCTATGCTGGAACTGGAAATGTTCTCAAGgtacaatctt ... tttcttgcagGTTCAAAATCTGTTGGGTCATTGTTCACAACATCTTGATAAAGGTGAAACT
EST: AATGTTCTCAAG GTTCAAAATCTGTTGGGTCATTGTTCACAACATCTTGATAAAGGTGAAACTEST: gi|193364114|gb|FK332636.1|FK332636
genomic: AATGTTCTCAAGgtacaatctt ... tttcttgcagGTTCAAAATCTGTTGGGTCATTGTTCACAACATCTTGATAAAGGTGAAACT
EST: AATGTTCTCAAG GTTCAAAATACTAGTTGGGTCATTGTTCACAACATCTTGATAAAGGTGAAA
genomic: AATGTTCTCAAGgtacaatctt ... tttcttgcagGTTCAAAAT-CT-GTTGGGTCATTGTTCACAACATCTTGATAAAGGTGAAA
tgattgcggatgcatctttttattttaatattttgctggtgcttctttcttgcagGTTCAAAATCTGTTGGGTCATTGTTCACAACATCTTGATAAAGGTGAAACTCACCAAGGTCCTGCTGTGCTTGGAATTGCTATGGTAGCTATGGCTGAAG
ttttaat putative branch site (score: 3)
tgcttctttcttgc putative PPT
atgcatctttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaatcttgtgataaactggttatgaattttttttaaaaaatgaaacttctgctgcacctttctatgtttataattgctgattgcggatgcatctttttattttaatattttgctggtgcttctttcttgcagGTTCAAAATCTGTTGGGTCATTGTTCACAACATCTTGATAAAGGTGAAACTCACCAAGGTCCTGCTGTGCTTGGAATTGCTATGGTAGCTATGGCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG