1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtgatattttgttacactcatttgtagagtatttcttcaattttgcaccatcggtgttttaagtaagttccgagttattttctttggacactgcagCTAGCTCTACTAGAAGCTGAGCAGAAAGCGGAGGAGGCCGAAGCACCAGAAACTAGTGCAAAGAAAAGAGGAAAGAAAAAAACTAGAAATTGATAATTTA
species | Glycine max |
transcript | GLYMA06G18170.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: AGCTCGGTACAGGGAGCTAAAAGCCTATTCTTGACGAG CTAGCTCTACTAGAAGCTGAGCAGAAAGCGGAGGAGGCCGAAGCACCAGAAEST: gi|193392869|gb|FK360974.1|FK360974
genomic: AGCTCGGTACAGGGAGCT-AAAGCCTATTCTTGACGAGgtgatatttt ... gacactgcagCTAGCTCTACTAGAAGCTGAGCAGAAAGCGGAGGAGGCCGAAGCACCAGAA
EST: AGCTCGGTACAGGGAGCTAAAGCCTATTCTTGACGAG CTAGCTCTACTAGAAGCTGAGCAGAAAGCGGAGGAGGCCGAAGCACCAGAAEST: gi|207786163|gb|GD758346.1|GD758346
genomic: AGCTCGGTACAGGGAGCTAAAGCCTATTCTTGACGAGgtgatatttt ... gacactgcagCTAGCTCTACTAGAAGCTGAGCAGAAAGCGGAGGAGGCCGAAGCACCAGAA
EST: TTGATCTTGCTGAAGCTCGGTACAGGGAGCTAAAGCCTATTCTTGACGAG CTAGCTCTACTAGAAGCTGAGCAGAAAGCGGAGGAGGCCGAAGCACCAGAA
genomic: TTGATCTTGCTGAAGCTCGGTACAGGGAGCTAAAGCCTATTCTTGACGAGgtgatatttt ... gacactgcagCTAGCTCTACTAGAAGCTGAGCAGAAAGCGGAGGAGGCCGAAGCACCAGAA
tttgcaccatcggtgttttaagtaagttccgagttattttctttggacactgcagCTAGCTCTACTAGAAGCTGAGCAGAAAGCGGAGGAGGCCGAAGCACCAGAAACTAGTGCAAAGAAAAGAGGAAAGAAAAAAACTAGAAATTGATAATTTA
ttattttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatattttgttacactcatttgtagagtatttcttcaattttgcaccatcggtgttttaagtaagttccgagttattttctttggacactgcagCTAGCTCTACTAGAAGCTGAGCAGAAAGCGGAGGAGGCCGAAGCACCAGAAACTAGTGCAAAGAAAAGAGGAAAGAAAAAAACTAGAAATTGATAATTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA